Results 121 - 140 of 211 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28277 | 3' | -36.1 | NC_005902.1 | + | 95460 | 0.76 | 1 |
Target: 5'- -cUUAACUCUUAAGGUAUgAUUAAUa -3' miRNA: 3'- gaAAUUGAGGAUUUCAUAaUAGUUAc -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 113734 | 0.76 | 1 |
Target: 5'- cCUUUAACUCCUAAAGcAgcAUCAu-- -3' miRNA: 3'- -GAAAUUGAGGAUUUCaUaaUAGUuac -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 81600 | 0.77 | 1 |
Target: 5'- ---cGAUUCaUAAAGUGUUAUCGAUGa -3' miRNA: 3'- gaaaUUGAGgAUUUCAUAAUAGUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 157919 | 0.77 | 1 |
Target: 5'- cCUUUAACUCCau--GUGUcAUCGAUGa -3' miRNA: 3'- -GAAAUUGAGGauuuCAUAaUAGUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 37567 | 0.77 | 1 |
Target: 5'- uUUUAACUCCUAAGGcauc-UCGAUGa -3' miRNA: 3'- gAAAUUGAGGAUUUCauaauAGUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 11068 | 0.77 | 1 |
Target: 5'- aUUUAACUCCUAAGGcAUcAUUGAUGa -3' miRNA: 3'- gAAAUUGAGGAUUUCaUAaUAGUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 130997 | 0.77 | 1 |
Target: 5'- --gUAACUUCUAAAGUAUcAUCAAc- -3' miRNA: 3'- gaaAUUGAGGAUUUCAUAaUAGUUac -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 131236 | 0.77 | 1 |
Target: 5'- --gUAACUUCUAAAGUAUcAUCAAc- -3' miRNA: 3'- gaaAUUGAGGAUUUCAUAaUAGUUac -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 94670 | 0.77 | 1 |
Target: 5'- -cUUAACUCCUAAGGcAUUGUCu--- -3' miRNA: 3'- gaAAUUGAGGAUUUCaUAAUAGuuac -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 136368 | 0.78 | 1 |
Target: 5'- cCUUUAAUUCCUAAAGca-UAUCGAUa -3' miRNA: 3'- -GAAAUUGAGGAUUUCauaAUAGUUAc -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 155028 | 0.78 | 1 |
Target: 5'- -gUUAAaUCCUAAAGaGUUGUCGAUGa -3' miRNA: 3'- gaAAUUgAGGAUUUCaUAAUAGUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 97240 | 0.78 | 1 |
Target: 5'- cCUUcAAUUCUUAAGGUAUcAUCAAUGa -3' miRNA: 3'- -GAAaUUGAGGAUUUCAUAaUAGUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 82187 | 0.78 | 1 |
Target: 5'- cCUUUAACUCCaUAu--UGUUAUCAAUGa -3' miRNA: 3'- -GAAAUUGAGG-AUuucAUAAUAGUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 84999 | 0.78 | 1 |
Target: 5'- -gUUAAUUCCUAAAGcAUUGUgGAUGa -3' miRNA: 3'- gaAAUUGAGGAUUUCaUAAUAgUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 8291 | 0.78 | 1 |
Target: 5'- -gUUAACUCUUGAGGUGcUGUUGAUGc -3' miRNA: 3'- gaAAUUGAGGAUUUCAUaAUAGUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 161775 | 0.78 | 1 |
Target: 5'- cCUUUAACaCCUAAGGUGUcAUUGAUGa -3' miRNA: 3'- -GAAAUUGaGGAUUUCAUAaUAGUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 165881 | 0.78 | 1 |
Target: 5'- cCUUUAACUUCUAAGGUGUcAUUAAc- -3' miRNA: 3'- -GAAAUUGAGGAUUUCAUAaUAGUUac -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 144335 | 0.79 | 0.999999 |
Target: 5'- -aUUAACUCCUAAGGc---AUCAAUGa -3' miRNA: 3'- gaAAUUGAGGAUUUCauaaUAGUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 150153 | 0.79 | 0.999999 |
Target: 5'- cCUUUAACaCCUAAGGUGUgGUUGAUGa -3' miRNA: 3'- -GAAAUUGaGGAUUUCAUAaUAGUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 67193 | 0.79 | 0.999999 |
Target: 5'- cCUUUAACUCCUAAGGc---AUCAAUa -3' miRNA: 3'- -GAAAUUGAGGAUUUCauaaUAGUUAc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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