Results 141 - 160 of 211 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28277 | 3' | -36.1 | NC_005902.1 | + | 161949 | 0.79 | 0.999999 |
Target: 5'- aCUUUAACUCCUAAGGcAUcGUUAAUa -3' miRNA: 3'- -GAAAUUGAGGAUUUCaUAaUAGUUAc -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 98704 | 0.79 | 0.999999 |
Target: 5'- cCUUUAACUCUUAAGGUGUcAUUAAc- -3' miRNA: 3'- -GAAAUUGAGGAUUUCAUAaUAGUUac -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 169669 | 0.79 | 0.999999 |
Target: 5'- uUUUAACUCUUAAGGcGUcAUCAAUGa -3' miRNA: 3'- gAAAUUGAGGAUUUCaUAaUAGUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 67193 | 0.79 | 0.999999 |
Target: 5'- cCUUUAACUCCUAAGGc---AUCAAUa -3' miRNA: 3'- -GAAAUUGAGGAUUUCauaaUAGUUAc -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 58329 | 0.79 | 0.999999 |
Target: 5'- gUUUAACUCCcAAGGcGUUAUCAAUa -3' miRNA: 3'- gAAAUUGAGGaUUUCaUAAUAGUUAc -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 136731 | 0.79 | 0.999999 |
Target: 5'- uCUUUAACUCCauguugucauUGAcaaugcuuAGUGUUGUCAAUGa -3' miRNA: 3'- -GAAAUUGAGG----------AUU--------UCAUAAUAGUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 75755 | 0.8 | 0.999996 |
Target: 5'- -cUUAACUCCUAAAGcaccAUCAAUGa -3' miRNA: 3'- gaAAUUGAGGAUUUCauaaUAGUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 99186 | 0.8 | 0.999998 |
Target: 5'- -cUUAACUUCUAAGGcAUUGUUAAUGa -3' miRNA: 3'- gaAAUUGAGGAUUUCaUAAUAGUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 49242 | 0.8 | 0.999998 |
Target: 5'- -cUUAACUCCUAGAGcuUUAUCAAc- -3' miRNA: 3'- gaAAUUGAGGAUUUCauAAUAGUUac -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 149385 | 0.8 | 0.999998 |
Target: 5'- -aUUAACUCCUAAAaUGUcAUCGAUGa -3' miRNA: 3'- gaAAUUGAGGAUUUcAUAaUAGUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 39019 | 0.8 | 0.999996 |
Target: 5'- -aUUAACUUCUAAGGcAUUGUUAAUGa -3' miRNA: 3'- gaAAUUGAGGAUUUCaUAAUAGUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 37678 | 0.81 | 0.999973 |
Target: 5'- uCUUUAACUCUUAAAGUAUcaUAaCAAUGu -3' miRNA: 3'- -GAAAUUGAGGAUUUCAUA--AUaGUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 136866 | 0.81 | 0.999973 |
Target: 5'- uUUUAAUcCCUAAAGUGUcAUCAAUGa -3' miRNA: 3'- gAAAUUGaGGAUUUCAUAaUAGUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 81408 | 0.81 | 0.999981 |
Target: 5'- -aUUAACUCUUAAGGUGUUGUUAu-- -3' miRNA: 3'- gaAAUUGAGGAUUUCAUAAUAGUuac -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 106321 | 0.81 | 0.999986 |
Target: 5'- uCUUUAACUCCUAAGGcAUcAUUAAUGc -3' miRNA: 3'- -GAAAUUGAGGAUUUCaUAaUAGUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 90491 | 0.81 | 0.999981 |
Target: 5'- cCUUUAACUCUUAAGGcAUcAUCGAUGa -3' miRNA: 3'- -GAAAUUGAGGAUUUCaUAaUAGUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 15931 | 0.81 | 0.999973 |
Target: 5'- cCUUUAAUUCCUGGGGUAUcAUUAAUa -3' miRNA: 3'- -GAAAUUGAGGAUUUCAUAaUAGUUAc -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 95877 | 0.81 | 0.999973 |
Target: 5'- --cUAACUCCUAAGGcAUUAUCAAc- -3' miRNA: 3'- gaaAUUGAGGAUUUCaUAAUAGUUac -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 16806 | 0.81 | 0.999986 |
Target: 5'- cCUUUAACUCCUAAGGcAUcAUUGAUGa -3' miRNA: 3'- -GAAAUUGAGGAUUUCaUAaUAGUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 156711 | 0.82 | 0.999948 |
Target: 5'- cCUUUAACUCUUAAGGcAUcAUCAAUGa -3' miRNA: 3'- -GAAAUUGAGGAUUUCaUAaUAGUUAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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