miRNA display CGI


Results 81 - 100 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28277 3' -36.1 NC_005902.1 + 165881 0.78 1
Target:  5'- cCUUUAACUUCUAAGGUGUcAUUAAc- -3'
miRNA:   3'- -GAAAUUGAGGAUUUCAUAaUAGUUac -5'
28277 3' -36.1 NC_005902.1 + 155028 0.78 1
Target:  5'- -gUUAAaUCCUAAAGaGUUGUCGAUGa -3'
miRNA:   3'- gaAAUUgAGGAUUUCaUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 11068 0.77 1
Target:  5'- aUUUAACUCCUAAGGcAUcAUUGAUGa -3'
miRNA:   3'- gAAAUUGAGGAUUUCaUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 81600 0.77 1
Target:  5'- ---cGAUUCaUAAAGUGUUAUCGAUGa -3'
miRNA:   3'- gaaaUUGAGgAUUUCAUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 37567 0.77 1
Target:  5'- uUUUAACUCCUAAGGcauc-UCGAUGa -3'
miRNA:   3'- gAAAUUGAGGAUUUCauaauAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 130997 0.77 1
Target:  5'- --gUAACUUCUAAAGUAUcAUCAAc- -3'
miRNA:   3'- gaaAUUGAGGAUUUCAUAaUAGUUac -5'
28277 3' -36.1 NC_005902.1 + 157919 0.77 1
Target:  5'- cCUUUAACUCCau--GUGUcAUCGAUGa -3'
miRNA:   3'- -GAAAUUGAGGauuuCAUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 94670 0.77 1
Target:  5'- -cUUAACUCCUAAGGcAUUGUCu--- -3'
miRNA:   3'- gaAAUUGAGGAUUUCaUAAUAGuuac -5'
28277 3' -36.1 NC_005902.1 + 131236 0.77 1
Target:  5'- --gUAACUUCUAAAGUAUcAUCAAc- -3'
miRNA:   3'- gaaAUUGAGGAUUUCAUAaUAGUUac -5'
28277 3' -36.1 NC_005902.1 + 84044 0.76 1
Target:  5'- cCUUUAACUCCUAAGaUAUcAUCAAc- -3'
miRNA:   3'- -GAAAUUGAGGAUUUcAUAaUAGUUac -5'
28277 3' -36.1 NC_005902.1 + 27731 0.76 1
Target:  5'- uCUUUAACUCCUAAGGcAUcAUCGccgAUGg -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAaUAGU---UAC- -5'
28277 3' -36.1 NC_005902.1 + 95460 0.76 1
Target:  5'- -cUUAACUCUUAAGGUAUgAUUAAUa -3'
miRNA:   3'- gaAAUUGAGGAUUUCAUAaUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 39266 0.76 1
Target:  5'- uUUUAACUUCUAAGGcAUUGUUAAUa -3'
miRNA:   3'- gAAAUUGAGGAUUUCaUAAUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 27848 0.76 1
Target:  5'- uCUUUAACUCCUAAGGcAUcAUCGccgAUGg -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAaUAGU---UAC- -5'
28277 3' -36.1 NC_005902.1 + 93715 0.76 1
Target:  5'- --cUGACUCCUAAAGUGUcAUUGAc- -3'
miRNA:   3'- gaaAUUGAGGAUUUCAUAaUAGUUac -5'
28277 3' -36.1 NC_005902.1 + 150210 0.76 1
Target:  5'- -gUUAACUCCUAAuGUGUcAUCAAc- -3'
miRNA:   3'- gaAAUUGAGGAUUuCAUAaUAGUUac -5'
28277 3' -36.1 NC_005902.1 + 94618 0.76 1
Target:  5'- aUUUAACUCuuuaCUAAGGUAUUAUUGAUa -3'
miRNA:   3'- gAAAUUGAG----GAUUUCAUAAUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 50416 0.76 1
Target:  5'- -gUUAAUUCCUAAGGcAUcAUCGAUGa -3'
miRNA:   3'- gaAAUUGAGGAUUUCaUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 76426 0.76 1
Target:  5'- uCUUUAAUUCCac-AGUGUUGUUGAUGa -3'
miRNA:   3'- -GAAAUUGAGGauuUCAUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 122653 0.76 1
Target:  5'- -aUUAAUUCUUAAGGUAUcAUUAAUGa -3'
miRNA:   3'- gaAAUUGAGGAUUUCAUAaUAGUUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.