miRNA display CGI


Results 101 - 120 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28277 3' -36.1 NC_005902.1 + 27848 0.76 1
Target:  5'- uCUUUAACUCCUAAGGcAUcAUCGccgAUGg -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAaUAGU---UAC- -5'
28277 3' -36.1 NC_005902.1 + 95460 0.76 1
Target:  5'- -cUUAACUCUUAAGGUAUgAUUAAUa -3'
miRNA:   3'- gaAAUUGAGGAUUUCAUAaUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 93715 0.76 1
Target:  5'- --cUGACUCCUAAAGUGUcAUUGAc- -3'
miRNA:   3'- gaaAUUGAGGAUUUCAUAaUAGUUac -5'
28277 3' -36.1 NC_005902.1 + 76075 0.75 1
Target:  5'- uUUUAACUCUUAAGGUGUU---GAUGa -3'
miRNA:   3'- gAAAUUGAGGAUUUCAUAAuagUUAC- -5'
28277 3' -36.1 NC_005902.1 + 130812 0.75 1
Target:  5'- cCUUUAACUUCUAAGGcGUcAUCGAUa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAaUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 11424 0.75 1
Target:  5'- -cUUAACUCUUAAGGcAUcAUCAAUGa -3'
miRNA:   3'- gaAAUUGAGGAUUUCaUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 129205 0.75 1
Target:  5'- gUUUAACUCCUugaaaacuaGAAG-AUUGUCAAUa -3'
miRNA:   3'- gAAAUUGAGGA---------UUUCaUAAUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 16179 0.75 1
Target:  5'- cCUUUAACUCCacaUcaucaacgacaauguAGAGUGUUAUUAAUGa -3'
miRNA:   3'- -GAAAUUGAGG---A---------------UUUCAUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 162134 0.75 1
Target:  5'- gUUUAcC-CCUAAGGUGUUAUUGAUGa -3'
miRNA:   3'- gAAAUuGaGGAUUUCAUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 29526 0.75 1
Target:  5'- cCUUUAAUUCCac-GGUGUcAUCAAUGa -3'
miRNA:   3'- -GAAAUUGAGGauuUCAUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 28753 0.75 1
Target:  5'- --gUAAUUCCUAAAacAUUGUCAAUGa -3'
miRNA:   3'- gaaAUUGAGGAUUUcaUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 11440 0.75 1
Target:  5'- uCUUUAAUUCUUAAaaAGUAUUGUUGAUa -3'
miRNA:   3'- -GAAAUUGAGGAUU--UCAUAAUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 55132 0.75 1
Target:  5'- uUUUAACUCUUAAGaUGUUAUCAAc- -3'
miRNA:   3'- gAAAUUGAGGAUUUcAUAAUAGUUac -5'
28277 3' -36.1 NC_005902.1 + 93292 0.75 1
Target:  5'- uCUUUAACUUUUAAAGcAUcAUCAAUGa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 61760 0.74 1
Target:  5'- ----cACUCCUAAGGcAUUGUCAAc- -3'
miRNA:   3'- gaaauUGAGGAUUUCaUAAUAGUUac -5'
28277 3' -36.1 NC_005902.1 + 99909 0.74 1
Target:  5'- cCUUUAAUUCCUAAGGcGUcAUCAAc- -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAaUAGUUac -5'
28277 3' -36.1 NC_005902.1 + 16307 0.74 1
Target:  5'- -aUUAACUCCUAAGGcaucauUAUUAaCAAUGc -3'
miRNA:   3'- gaAAUUGAGGAUUUC------AUAAUaGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 95372 0.74 1
Target:  5'- uUUUAAUUUCUAAGGUGcUAUCAAc- -3'
miRNA:   3'- gAAAUUGAGGAUUUCAUaAUAGUUac -5'
28277 3' -36.1 NC_005902.1 + 81171 0.74 1
Target:  5'- cCUUUAACUCUUAAAaUAUUGUUAAc- -3'
miRNA:   3'- -GAAAUUGAGGAUUUcAUAAUAGUUac -5'
28277 3' -36.1 NC_005902.1 + 40738 0.74 1
Target:  5'- uUUUAACUCCaugc-UAUUGUCAAUGa -3'
miRNA:   3'- gAAAUUGAGGauuucAUAAUAGUUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.