miRNA display CGI


Results 121 - 140 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28277 3' -36.1 NC_005902.1 + 93489 0.73 1
Target:  5'- cCUUUAACUCUacau-UAUUGUCAAUGa -3'
miRNA:   3'- -GAAAUUGAGGauuucAUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 142333 0.73 1
Target:  5'- uCUUUAACaCCUAAAGcAUcAUCGAUGa -3'
miRNA:   3'- -GAAAUUGaGGAUUUCaUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 139818 0.73 1
Target:  5'- uUUUAACUCCa----UGUUGUCAAUGa -3'
miRNA:   3'- gAAAUUGAGGauuucAUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 83800 0.73 1
Target:  5'- -gUUAACUCCUAAGGcAUUAaUGAUGu -3'
miRNA:   3'- gaAAUUGAGGAUUUCaUAAUaGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 97110 0.73 1
Target:  5'- uUUUAACUCUgaacaUGUUGUCAAUGa -3'
miRNA:   3'- gAAAUUGAGGauuucAUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 123082 0.73 1
Target:  5'- cCUUUAAUUCCUAAGGcAUcAUCAAc- -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAaUAGUUac -5'
28277 3' -36.1 NC_005902.1 + 45257 0.73 1
Target:  5'- cCUUUAACUCCacac--AUUAUCAAUGa -3'
miRNA:   3'- -GAAAUUGAGGauuucaUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 26209 0.73 1
Target:  5'- -cUUAACUCCUAAGGcaucAUUGaCGAUGg -3'
miRNA:   3'- gaAAUUGAGGAUUUCa---UAAUaGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 79327 0.73 1
Target:  5'- cCUUUGACUCUUAAAaUGcUAUCAAUa -3'
miRNA:   3'- -GAAAUUGAGGAUUUcAUaAUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 80299 0.73 1
Target:  5'- uUUUuACUCCUGAGGUA--GUUGAUGc -3'
miRNA:   3'- gAAAuUGAGGAUUUCAUaaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 134459 0.73 1
Target:  5'- -gUUAACUCUUAAAGcAUUGUUGAUa -3'
miRNA:   3'- gaAAUUGAGGAUUUCaUAAUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 137787 0.73 1
Target:  5'- uUUUAGCUCCUAuGGcAUUAUUGAUa -3'
miRNA:   3'- gAAAUUGAGGAUuUCaUAAUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 10733 0.73 1
Target:  5'- cCUUUAACUCUUAAGaUGUUGUUAAc- -3'
miRNA:   3'- -GAAAUUGAGGAUUUcAUAAUAGUUac -5'
28277 3' -36.1 NC_005902.1 + 72062 0.72 1
Target:  5'- cCUUUAAaUCUUuAGGUAUUAUCGAUa -3'
miRNA:   3'- -GAAAUUgAGGAuUUCAUAAUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 78735 0.72 1
Target:  5'- -cUUAACUCCUAAAGcGUUGaCAAc- -3'
miRNA:   3'- gaAAUUGAGGAUUUCaUAAUaGUUac -5'
28277 3' -36.1 NC_005902.1 + 28879 0.72 1
Target:  5'- -aUUAAUUCCUAGGGcAUcagcacUGUCAGUGa -3'
miRNA:   3'- gaAAUUGAGGAUUUCaUA------AUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 172666 0.72 1
Target:  5'- -gUUAACUCUagaUuaucauuaaugauguGAAGUGUUGUCAAUGa -3'
miRNA:   3'- gaAAUUGAGG---A---------------UUUCAUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 167209 0.72 1
Target:  5'- -gUUAACUCCUAAGGcAUUGUUu--- -3'
miRNA:   3'- gaAAUUGAGGAUUUCaUAAUAGuuac -5'
28277 3' -36.1 NC_005902.1 + 68108 0.71 1
Target:  5'- cCUUUAACUCUa----UAUUAUCGAUGa -3'
miRNA:   3'- -GAAAUUGAGGauuucAUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 170985 0.71 1
Target:  5'- -gUUAACUCUgaauGUGUUGUUggUGa -3'
miRNA:   3'- gaAAUUGAGGauuuCAUAAUAGuuAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.