miRNA display CGI


Results 61 - 80 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28277 3' -36.1 NC_005902.1 + 75755 0.8 0.999996
Target:  5'- -cUUAACUCCUAAAGcaccAUCAAUGa -3'
miRNA:   3'- gaAAUUGAGGAUUUCauaaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 39019 0.8 0.999996
Target:  5'- -aUUAACUUCUAAGGcAUUGUUAAUGa -3'
miRNA:   3'- gaAAUUGAGGAUUUCaUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 149385 0.8 0.999998
Target:  5'- -aUUAACUCCUAAAaUGUcAUCGAUGa -3'
miRNA:   3'- gaAAUUGAGGAUUUcAUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 99186 0.8 0.999998
Target:  5'- -cUUAACUUCUAAGGcAUUGUUAAUGa -3'
miRNA:   3'- gaAAUUGAGGAUUUCaUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 49242 0.8 0.999998
Target:  5'- -cUUAACUCCUAGAGcuUUAUCAAc- -3'
miRNA:   3'- gaAAUUGAGGAUUUCauAAUAGUUac -5'
28277 3' -36.1 NC_005902.1 + 4581 0.79 0.999999
Target:  5'- --aUGAUUCUUAAAGcAUUAUCAAUGa -3'
miRNA:   3'- gaaAUUGAGGAUUUCaUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 161949 0.79 0.999999
Target:  5'- aCUUUAACUCCUAAGGcAUcGUUAAUa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAaUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 150153 0.79 0.999999
Target:  5'- cCUUUAACaCCUAAGGUGUgGUUGAUGa -3'
miRNA:   3'- -GAAAUUGaGGAUUUCAUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 144335 0.79 0.999999
Target:  5'- -aUUAACUCCUAAGGc---AUCAAUGa -3'
miRNA:   3'- gaAAUUGAGGAUUUCauaaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 58329 0.79 0.999999
Target:  5'- gUUUAACUCCcAAGGcGUUAUCAAUa -3'
miRNA:   3'- gAAAUUGAGGaUUUCaUAAUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 98704 0.79 0.999999
Target:  5'- cCUUUAACUCUUAAGGUGUcAUUAAc- -3'
miRNA:   3'- -GAAAUUGAGGAUUUCAUAaUAGUUac -5'
28277 3' -36.1 NC_005902.1 + 169669 0.79 0.999999
Target:  5'- uUUUAACUCUUAAGGcGUcAUCAAUGa -3'
miRNA:   3'- gAAAUUGAGGAUUUCaUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 136731 0.79 0.999999
Target:  5'- uCUUUAACUCCauguugucauUGAcaaugcuuAGUGUUGUCAAUGa -3'
miRNA:   3'- -GAAAUUGAGG----------AUU--------UCAUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 67193 0.79 0.999999
Target:  5'- cCUUUAACUCCUAAGGc---AUCAAUa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCauaaUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 94670 0.77 1
Target:  5'- -cUUAACUCCUAAGGcAUUGUCu--- -3'
miRNA:   3'- gaAAUUGAGGAUUUCaUAAUAGuuac -5'
28277 3' -36.1 NC_005902.1 + 131236 0.77 1
Target:  5'- --gUAACUUCUAAAGUAUcAUCAAc- -3'
miRNA:   3'- gaaAUUGAGGAUUUCAUAaUAGUUac -5'
28277 3' -36.1 NC_005902.1 + 27848 0.76 1
Target:  5'- uCUUUAACUCCUAAGGcAUcAUCGccgAUGg -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAaUAGU---UAC- -5'
28277 3' -36.1 NC_005902.1 + 68108 0.71 1
Target:  5'- cCUUUAACUCUa----UAUUAUCGAUGa -3'
miRNA:   3'- -GAAAUUGAGGauuucAUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 174933 0.66 1
Target:  5'- -aUUAACUCCUAAAa---UAUCAuUGa -3'
miRNA:   3'- gaAAUUGAGGAUUUcauaAUAGUuAC- -5'
28277 3' -36.1 NC_005902.1 + 170985 0.71 1
Target:  5'- -gUUAACUCUgaauGUGUUGUUggUGa -3'
miRNA:   3'- gaAAUUGAGGauuuCAUAAUAGuuAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.