miRNA display CGI


Results 101 - 120 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28277 3' -36.1 NC_005902.1 + 129205 0.75 1
Target:  5'- gUUUAACUCCUugaaaacuaGAAG-AUUGUCAAUa -3'
miRNA:   3'- gAAAUUGAGGA---------UUUCaUAAUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 99909 0.74 1
Target:  5'- cCUUUAAUUCCUAAGGcGUcAUCAAc- -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAaUAGUUac -5'
28277 3' -36.1 NC_005902.1 + 61760 0.74 1
Target:  5'- ----cACUCCUAAGGcAUUGUCAAc- -3'
miRNA:   3'- gaaauUGAGGAUUUCaUAAUAGUUac -5'
28277 3' -36.1 NC_005902.1 + 16307 0.74 1
Target:  5'- -aUUAACUCCUAAGGcaucauUAUUAaCAAUGc -3'
miRNA:   3'- gaAAUUGAGGAUUUC------AUAAUaGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 142333 0.73 1
Target:  5'- uCUUUAACaCCUAAAGcAUcAUCGAUGa -3'
miRNA:   3'- -GAAAUUGaGGAUUUCaUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 123082 0.73 1
Target:  5'- cCUUUAAUUCCUAAGGcAUcAUCAAc- -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAaUAGUUac -5'
28277 3' -36.1 NC_005902.1 + 10733 0.73 1
Target:  5'- cCUUUAACUCUUAAGaUGUUGUUAAc- -3'
miRNA:   3'- -GAAAUUGAGGAUUUcAUAAUAGUUac -5'
28277 3' -36.1 NC_005902.1 + 84044 0.76 1
Target:  5'- cCUUUAACUCCUAAGaUAUcAUCAAc- -3'
miRNA:   3'- -GAAAUUGAGGAUUUcAUAaUAGUUac -5'
28277 3' -36.1 NC_005902.1 + 150210 0.76 1
Target:  5'- -gUUAACUCCUAAuGUGUcAUCAAc- -3'
miRNA:   3'- gaAAUUGAGGAUUuCAUAaUAGUUac -5'
28277 3' -36.1 NC_005902.1 + 93715 0.76 1
Target:  5'- --cUGACUCCUAAAGUGUcAUUGAc- -3'
miRNA:   3'- gaaAUUGAGGAUUUCAUAaUAGUUac -5'
28277 3' -36.1 NC_005902.1 + 174933 0.66 1
Target:  5'- -aUUAACUCCUAAAa---UAUCAuUGa -3'
miRNA:   3'- gaAAUUGAGGAUUUcauaAUAGUuAC- -5'
28277 3' -36.1 NC_005902.1 + 5899 0.71 1
Target:  5'- uCUUUAACcCCUAagcuauauacaaauAAGUGUUGUgAAUGa -3'
miRNA:   3'- -GAAAUUGaGGAU--------------UUCAUAAUAgUUAC- -5'
28277 3' -36.1 NC_005902.1 + 72062 0.72 1
Target:  5'- cCUUUAAaUCUUuAGGUAUUAUCGAUa -3'
miRNA:   3'- -GAAAUUgAGGAuUUCAUAAUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 80299 0.73 1
Target:  5'- uUUUuACUCCUGAGGUA--GUUGAUGc -3'
miRNA:   3'- gAAAuUGAGGAUUUCAUaaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 16179 0.75 1
Target:  5'- cCUUUAACUCCacaUcaucaacgacaauguAGAGUGUUAUUAAUGa -3'
miRNA:   3'- -GAAAUUGAGG---A---------------UUUCAUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 45257 0.73 1
Target:  5'- cCUUUAACUCCacac--AUUAUCAAUGa -3'
miRNA:   3'- -GAAAUUGAGGauuucaUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 94670 0.77 1
Target:  5'- -cUUAACUCCUAAGGcAUUGUCu--- -3'
miRNA:   3'- gaAAUUGAGGAUUUCaUAAUAGuuac -5'
28277 3' -36.1 NC_005902.1 + 131236 0.77 1
Target:  5'- --gUAACUUCUAAAGUAUcAUCAAc- -3'
miRNA:   3'- gaaAUUGAGGAUUUCAUAaUAGUUac -5'
28277 3' -36.1 NC_005902.1 + 134459 0.73 1
Target:  5'- -gUUAACUCUUAAAGcAUUGUUGAUa -3'
miRNA:   3'- gaAAUUGAGGAUUUCaUAAUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 27848 0.76 1
Target:  5'- uCUUUAACUCCUAAGGcAUcAUCGccgAUGg -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAaUAGU---UAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.