miRNA display CGI


Results 81 - 100 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28277 3' -36.1 NC_005902.1 + 72062 0.72 1
Target:  5'- cCUUUAAaUCUUuAGGUAUUAUCGAUa -3'
miRNA:   3'- -GAAAUUgAGGAuUUCAUAAUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 73625 0.66 1
Target:  5'- cCUUUAACUCUUAA---GUUGUUGAUa -3'
miRNA:   3'- -GAAAUUGAGGAUUucaUAAUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 75079 0.82 0.999929
Target:  5'- cCUUUAACUCCUAAuGcGUUGUUGAUGa -3'
miRNA:   3'- -GAAAUUGAGGAUUuCaUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 75755 0.8 0.999996
Target:  5'- -cUUAACUCCUAAAGcaccAUCAAUGa -3'
miRNA:   3'- gaAAUUGAGGAUUUCauaaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 76075 0.75 1
Target:  5'- uUUUAACUCUUAAGGUGUU---GAUGa -3'
miRNA:   3'- gAAAUUGAGGAUUUCAUAAuagUUAC- -5'
28277 3' -36.1 NC_005902.1 + 76113 0.71 1
Target:  5'- uCUUUAAUUCCaugu-UAUUAUCAAUGa -3'
miRNA:   3'- -GAAAUUGAGGauuucAUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 76426 0.76 1
Target:  5'- uCUUUAAUUCCac-AGUGUUGUUGAUGa -3'
miRNA:   3'- -GAAAUUGAGGauuUCAUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 77645 0.67 1
Target:  5'- gCUUUGGCUCauaaacaUAAAGUAgcugAUCAAa- -3'
miRNA:   3'- -GAAAUUGAGg------AUUUCAUaa--UAGUUac -5'
28277 3' -36.1 NC_005902.1 + 78735 0.72 1
Target:  5'- -cUUAACUCCUAAAGcGUUGaCAAc- -3'
miRNA:   3'- gaAAUUGAGGAUUUCaUAAUaGUUac -5'
28277 3' -36.1 NC_005902.1 + 79007 0.96 0.862261
Target:  5'- cCUUUAACUCUUAAGGUGUUAUCAAc- -3'
miRNA:   3'- -GAAAUUGAGGAUUUCAUAAUAGUUac -5'
28277 3' -36.1 NC_005902.1 + 79251 0.71 1
Target:  5'- cCUUUAuUUUUUAAGGUGUUAUUggUGa -3'
miRNA:   3'- -GAAAUuGAGGAUUUCAUAAUAGuuAC- -5'
28277 3' -36.1 NC_005902.1 + 79327 0.73 1
Target:  5'- cCUUUGACUCUUAAAaUGcUAUCAAUa -3'
miRNA:   3'- -GAAAUUGAGGAUUUcAUaAUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 79481 0.71 1
Target:  5'- cCUUUGACUCUUGAAGUucac-CAAUa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCAuaauaGUUAc -5'
28277 3' -36.1 NC_005902.1 + 80299 0.73 1
Target:  5'- uUUUuACUCCUGAGGUA--GUUGAUGc -3'
miRNA:   3'- gAAAuUGAGGAUUUCAUaaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 80861 0.94 0.922881
Target:  5'- -aUUAACUUCUAAAGUGUUAUCAAUa -3'
miRNA:   3'- gaAAUUGAGGAUUUCAUAAUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 81171 0.74 1
Target:  5'- cCUUUAACUCUUAAAaUAUUGUUAAc- -3'
miRNA:   3'- -GAAAUUGAGGAUUUcAUAAUAGUUac -5'
28277 3' -36.1 NC_005902.1 + 81408 0.81 0.999981
Target:  5'- -aUUAACUCUUAAGGUGUUGUUAu-- -3'
miRNA:   3'- gaAAUUGAGGAUUUCAUAAUAGUuac -5'
28277 3' -36.1 NC_005902.1 + 81600 0.77 1
Target:  5'- ---cGAUUCaUAAAGUGUUAUCGAUGa -3'
miRNA:   3'- gaaaUUGAGgAUUUCAUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 81857 0.92 0.955232
Target:  5'- uCUUUAACUCCUAAGGcGUUAUUGAUGa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 81997 0.86 0.997262
Target:  5'- cCUUUAAaUCCUAAGGUGUUAUUggUGa -3'
miRNA:   3'- -GAAAUUgAGGAUUUCAUAAUAGuuAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.