miRNA display CGI


Results 101 - 120 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28277 3' -36.1 NC_005902.1 + 82105 0.66 1
Target:  5'- uUUUAACUCCaugu-UGUUAUUGAUGa -3'
miRNA:   3'- gAAAUUGAGGauuucAUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 82187 0.78 1
Target:  5'- cCUUUAACUCCaUAu--UGUUAUCAAUGa -3'
miRNA:   3'- -GAAAUUGAGG-AUuucAUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 82627 0.84 0.999476
Target:  5'- uUUUAACUCCUAAgauauuauugauguGGUGUUAUUGAUGa -3'
miRNA:   3'- gAAAUUGAGGAUU--------------UCAUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 83800 0.73 1
Target:  5'- -gUUAACUCCUAAGGcAUUAaUGAUGu -3'
miRNA:   3'- gaAAUUGAGGAUUUCaUAAUaGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 84044 0.76 1
Target:  5'- cCUUUAACUCCUAAGaUAUcAUCAAc- -3'
miRNA:   3'- -GAAAUUGAGGAUUUcAUAaUAGUUac -5'
28277 3' -36.1 NC_005902.1 + 84067 0.66 1
Target:  5'- cCUUUAACUCUgcac-UAUcAUCAAUGg -3'
miRNA:   3'- -GAAAUUGAGGauuucAUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 84999 0.78 1
Target:  5'- -gUUAAUUCCUAAAGcAUUGUgGAUGa -3'
miRNA:   3'- gaAAUUGAGGAUUUCaUAAUAgUUAC- -5'
28277 3' -36.1 NC_005902.1 + 85654 0.66 1
Target:  5'- uUUUAACUUUUAuGGUAUcAUUGAUGa -3'
miRNA:   3'- gAAAUUGAGGAUuUCAUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 86369 0.67 1
Target:  5'- aCUUUuACUUUUAAAGUAUUAUguAUu -3'
miRNA:   3'- -GAAAuUGAGGAUUUCAUAAUAguUAc -5'
28277 3' -36.1 NC_005902.1 + 87007 0.7 1
Target:  5'- cCUUUAAUcCCUAAGGUAUcAUUGAUa -3'
miRNA:   3'- -GAAAUUGaGGAUUUCAUAaUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 88957 0.71 1
Target:  5'- -gUUAAUaCUgUAAGGUAUUAUCAAUGa -3'
miRNA:   3'- gaAAUUGaGG-AUUUCAUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 89200 0.67 1
Target:  5'- uCUUUAACUCCUAAAGcAUa------- -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAauaguuac -5'
28277 3' -36.1 NC_005902.1 + 90491 0.81 0.999981
Target:  5'- cCUUUAACUCUUAAGGcAUcAUCGAUGa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 91071 0.85 0.999019
Target:  5'- -cUUAACUCCUAAGGcAUUAUUGAUGa -3'
miRNA:   3'- gaAAUUGAGGAUUUCaUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 92085 0.66 1
Target:  5'- uUUUAACUCUgcgu-UGUUGUCAAUa -3'
miRNA:   3'- gAAAUUGAGGauuucAUAAUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 92332 0.83 0.999775
Target:  5'- uUUUAACUUUUAAGGUAUcAUCAAUGa -3'
miRNA:   3'- gAAAUUGAGGAUUUCAUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 93292 0.75 1
Target:  5'- uCUUUAACUUUUAAAGcAUcAUCAAUGa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 93489 0.73 1
Target:  5'- cCUUUAACUCUacau-UAUUGUCAAUGa -3'
miRNA:   3'- -GAAAUUGAGGauuucAUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 93715 0.76 1
Target:  5'- --cUGACUCCUAAAGUGUcAUUGAc- -3'
miRNA:   3'- gaaAUUGAGGAUUUCAUAaUAGUUac -5'
28277 3' -36.1 NC_005902.1 + 94382 0.84 0.999513
Target:  5'- aUUUAACUCuuuaCUAAGGUAUUAUCAAUa -3'
miRNA:   3'- gAAAUUGAG----GAUUUCAUAAUAGUUAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.