Results 121 - 140 of 211 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28277 | 3' | -36.1 | NC_005902.1 | + | 94618 | 0.76 | 1 |
Target: 5'- aUUUAACUCuuuaCUAAGGUAUUAUUGAUa -3' miRNA: 3'- gAAAUUGAG----GAUUUCAUAAUAGUUAc -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 94670 | 0.77 | 1 |
Target: 5'- -cUUAACUCCUAAGGcAUUGUCu--- -3' miRNA: 3'- gaAAUUGAGGAUUUCaUAAUAGuuac -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 95372 | 0.74 | 1 |
Target: 5'- uUUUAAUUUCUAAGGUGcUAUCAAc- -3' miRNA: 3'- gAAAUUGAGGAUUUCAUaAUAGUUac -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 95460 | 0.76 | 1 |
Target: 5'- -cUUAACUCUUAAGGUAUgAUUAAUa -3' miRNA: 3'- gaAAUUGAGGAUUUCAUAaUAGUUAc -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 95877 | 0.81 | 0.999973 |
Target: 5'- --cUAACUCCUAAGGcAUUAUCAAc- -3' miRNA: 3'- gaaAUUGAGGAUUUCaUAAUAGUUac -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 96288 | 0.91 | 0.973923 |
Target: 5'- cCUUUAACUCCUAAGGcAUUAUCAAc- -3' miRNA: 3'- -GAAAUUGAGGAUUUCaUAAUAGUUac -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 97110 | 0.73 | 1 |
Target: 5'- uUUUAACUCUgaacaUGUUGUCAAUGa -3' miRNA: 3'- gAAAUUGAGGauuucAUAAUAGUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 97240 | 0.78 | 1 |
Target: 5'- cCUUcAAUUCUUAAGGUAUcAUCAAUGa -3' miRNA: 3'- -GAAaUUGAGGAUUUCAUAaUAGUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 97366 | 0.76 | 1 |
Target: 5'- uCUUUAACcUCUAAAGUGUaAUCAAUa -3' miRNA: 3'- -GAAAUUGaGGAUUUCAUAaUAGUUAc -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 98704 | 0.79 | 0.999999 |
Target: 5'- cCUUUAACUCUUAAGGUGUcAUUAAc- -3' miRNA: 3'- -GAAAUUGAGGAUUUCAUAaUAGUUac -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 99004 | 0.71 | 1 |
Target: 5'- uCUUUAACUCUgucauuaaugacaUAAAGcAUUGUUAGUGa -3' miRNA: 3'- -GAAAUUGAGG-------------AUUUCaUAAUAGUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 99186 | 0.8 | 0.999998 |
Target: 5'- -cUUAACUUCUAAGGcAUUGUUAAUGa -3' miRNA: 3'- gaAAUUGAGGAUUUCaUAAUAGUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 99909 | 0.74 | 1 |
Target: 5'- cCUUUAAUUCCUAAGGcGUcAUCAAc- -3' miRNA: 3'- -GAAAUUGAGGAUUUCaUAaUAGUUac -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 103936 | 0.68 | 1 |
Target: 5'- cCUUUAAUUCUUAAAGcAUcAUUGAUGa -3' miRNA: 3'- -GAAAUUGAGGAUUUCaUAaUAGUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 104284 | 0.67 | 1 |
Target: 5'- -gUUAACUCUUAAGGcAUcAUUGAUGa -3' miRNA: 3'- gaAAUUGAGGAUUUCaUAaUAGUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 106000 | 0.85 | 0.99938 |
Target: 5'- uCUUUAACUCCUAAGuUGUUcUCAAUGa -3' miRNA: 3'- -GAAAUUGAGGAUUUcAUAAuAGUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 106321 | 0.81 | 0.999986 |
Target: 5'- uCUUUAACUCCUAAGGcAUcAUUAAUGc -3' miRNA: 3'- -GAAAUUGAGGAUUUCaUAaUAGUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 110170 | 0.84 | 0.999513 |
Target: 5'- cCUUUAAUUCCUAAGGcAUUGUCAGa- -3' miRNA: 3'- -GAAAUUGAGGAUUUCaUAAUAGUUac -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 110226 | 1.07 | 0.422718 |
Target: 5'- cCUUUAACUCCUAAGGUAUUAUCAAUa -3' miRNA: 3'- -GAAAUUGAGGAUUUCAUAAUAGUUAc -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 111037 | 0.66 | 1 |
Target: 5'- -gUUAACUUCUAAAaUAUcAUUAAUGa -3' miRNA: 3'- gaAAUUGAGGAUUUcAUAaUAGUUAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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