miRNA display CGI


Results 61 - 80 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28277 3' -36.1 NC_005902.1 + 129205 0.75 1
Target:  5'- gUUUAACUCCUugaaaacuaGAAG-AUUGUCAAUa -3'
miRNA:   3'- gAAAUUGAGGA---------UUUCaUAAUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 125951 0.83 0.999829
Target:  5'- uCUUUAACUUCUAAGGcAUUGUUGAUGa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 125703 0.66 1
Target:  5'- gCUUUAACUUCacauc-AUUAUCAAUGa -3'
miRNA:   3'- -GAAAUUGAGGauuucaUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 123082 0.73 1
Target:  5'- cCUUUAAUUCCUAAGGcAUcAUCAAc- -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAaUAGUUac -5'
28277 3' -36.1 NC_005902.1 + 122653 0.76 1
Target:  5'- -aUUAAUUCUUAAGGUAUcAUUAAUGa -3'
miRNA:   3'- gaAAUUGAGGAUUUCAUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 118962 0.83 0.999903
Target:  5'- uUUUAACUCCUAAAGcAUUAUUGAUa -3'
miRNA:   3'- gAAAUUGAGGAUUUCaUAAUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 118722 0.71 1
Target:  5'- -cUUAACUCCacaccauuaaUGAcauAGUAUUAUCAAUa -3'
miRNA:   3'- gaAAUUGAGG----------AUU---UCAUAAUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 114990 0.7 1
Target:  5'- cCUUUAACUCUacaucgucaccgaUGAcauaacGUAUUAUCAAUGa -3'
miRNA:   3'- -GAAAUUGAGG-------------AUUu-----CAUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 114794 0.66 1
Target:  5'- cCUUUAACUCUUAAAGc---AUCAc-- -3'
miRNA:   3'- -GAAAUUGAGGAUUUCauaaUAGUuac -5'
28277 3' -36.1 NC_005902.1 + 113963 0.67 1
Target:  5'- cCUUUAACUUU----GUAUUGUUAAUGa -3'
miRNA:   3'- -GAAAUUGAGGauuuCAUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 113734 0.76 1
Target:  5'- cCUUUAACUCCUAAAGcAgcAUCAu-- -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUaaUAGUuac -5'
28277 3' -36.1 NC_005902.1 + 111037 0.66 1
Target:  5'- -gUUAACUUCUAAAaUAUcAUUAAUGa -3'
miRNA:   3'- gaAAUUGAGGAUUUcAUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 110226 1.07 0.422718
Target:  5'- cCUUUAACUCCUAAGGUAUUAUCAAUa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCAUAAUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 110170 0.84 0.999513
Target:  5'- cCUUUAAUUCCUAAGGcAUUGUCAGa- -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAAUAGUUac -5'
28277 3' -36.1 NC_005902.1 + 106321 0.81 0.999986
Target:  5'- uCUUUAACUCCUAAGGcAUcAUUAAUGc -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 106000 0.85 0.99938
Target:  5'- uCUUUAACUCCUAAGuUGUUcUCAAUGa -3'
miRNA:   3'- -GAAAUUGAGGAUUUcAUAAuAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 104284 0.67 1
Target:  5'- -gUUAACUCUUAAGGcAUcAUUGAUGa -3'
miRNA:   3'- gaAAUUGAGGAUUUCaUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 103936 0.68 1
Target:  5'- cCUUUAAUUCUUAAAGcAUcAUUGAUGa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 99909 0.74 1
Target:  5'- cCUUUAAUUCCUAAGGcGUcAUCAAc- -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAaUAGUUac -5'
28277 3' -36.1 NC_005902.1 + 99186 0.8 0.999998
Target:  5'- -cUUAACUUCUAAGGcAUUGUUAAUGa -3'
miRNA:   3'- gaAAUUGAGGAUUUCaUAAUAGUUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.