Results 81 - 100 of 211 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28277 | 3' | -36.1 | NC_005902.1 | + | 99004 | 0.71 | 1 |
Target: 5'- uCUUUAACUCUgucauuaaugacaUAAAGcAUUGUUAGUGa -3' miRNA: 3'- -GAAAUUGAGG-------------AUUUCaUAAUAGUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 98704 | 0.79 | 0.999999 |
Target: 5'- cCUUUAACUCUUAAGGUGUcAUUAAc- -3' miRNA: 3'- -GAAAUUGAGGAUUUCAUAaUAGUUac -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 97366 | 0.76 | 1 |
Target: 5'- uCUUUAACcUCUAAAGUGUaAUCAAUa -3' miRNA: 3'- -GAAAUUGaGGAUUUCAUAaUAGUUAc -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 97240 | 0.78 | 1 |
Target: 5'- cCUUcAAUUCUUAAGGUAUcAUCAAUGa -3' miRNA: 3'- -GAAaUUGAGGAUUUCAUAaUAGUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 97110 | 0.73 | 1 |
Target: 5'- uUUUAACUCUgaacaUGUUGUCAAUGa -3' miRNA: 3'- gAAAUUGAGGauuucAUAAUAGUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 96288 | 0.91 | 0.973923 |
Target: 5'- cCUUUAACUCCUAAGGcAUUAUCAAc- -3' miRNA: 3'- -GAAAUUGAGGAUUUCaUAAUAGUUac -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 95877 | 0.81 | 0.999973 |
Target: 5'- --cUAACUCCUAAGGcAUUAUCAAc- -3' miRNA: 3'- gaaAUUGAGGAUUUCaUAAUAGUUac -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 95460 | 0.76 | 1 |
Target: 5'- -cUUAACUCUUAAGGUAUgAUUAAUa -3' miRNA: 3'- gaAAUUGAGGAUUUCAUAaUAGUUAc -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 95372 | 0.74 | 1 |
Target: 5'- uUUUAAUUUCUAAGGUGcUAUCAAc- -3' miRNA: 3'- gAAAUUGAGGAUUUCAUaAUAGUUac -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 94670 | 0.77 | 1 |
Target: 5'- -cUUAACUCCUAAGGcAUUGUCu--- -3' miRNA: 3'- gaAAUUGAGGAUUUCaUAAUAGuuac -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 94618 | 0.76 | 1 |
Target: 5'- aUUUAACUCuuuaCUAAGGUAUUAUUGAUa -3' miRNA: 3'- gAAAUUGAG----GAUUUCAUAAUAGUUAc -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 94382 | 0.84 | 0.999513 |
Target: 5'- aUUUAACUCuuuaCUAAGGUAUUAUCAAUa -3' miRNA: 3'- gAAAUUGAG----GAUUUCAUAAUAGUUAc -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 93715 | 0.76 | 1 |
Target: 5'- --cUGACUCCUAAAGUGUcAUUGAc- -3' miRNA: 3'- gaaAUUGAGGAUUUCAUAaUAGUUac -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 93489 | 0.73 | 1 |
Target: 5'- cCUUUAACUCUacau-UAUUGUCAAUGa -3' miRNA: 3'- -GAAAUUGAGGauuucAUAAUAGUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 93292 | 0.75 | 1 |
Target: 5'- uCUUUAACUUUUAAAGcAUcAUCAAUGa -3' miRNA: 3'- -GAAAUUGAGGAUUUCaUAaUAGUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 92332 | 0.83 | 0.999775 |
Target: 5'- uUUUAACUUUUAAGGUAUcAUCAAUGa -3' miRNA: 3'- gAAAUUGAGGAUUUCAUAaUAGUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 92085 | 0.66 | 1 |
Target: 5'- uUUUAACUCUgcgu-UGUUGUCAAUa -3' miRNA: 3'- gAAAUUGAGGauuucAUAAUAGUUAc -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 91071 | 0.85 | 0.999019 |
Target: 5'- -cUUAACUCCUAAGGcAUUAUUGAUGa -3' miRNA: 3'- gaAAUUGAGGAUUUCaUAAUAGUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 90491 | 0.81 | 0.999981 |
Target: 5'- cCUUUAACUCUUAAGGcAUcAUCGAUGa -3' miRNA: 3'- -GAAAUUGAGGAUUUCaUAaUAGUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 89200 | 0.67 | 1 |
Target: 5'- uCUUUAACUCCUAAAGcAUa------- -3' miRNA: 3'- -GAAAUUGAGGAUUUCaUAauaguuac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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