miRNA display CGI


Results 101 - 120 of 211 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28277 3' -36.1 NC_005902.1 + 88957 0.71 1
Target:  5'- -gUUAAUaCUgUAAGGUAUUAUCAAUGa -3'
miRNA:   3'- gaAAUUGaGG-AUUUCAUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 87007 0.7 1
Target:  5'- cCUUUAAUcCCUAAGGUAUcAUUGAUa -3'
miRNA:   3'- -GAAAUUGaGGAUUUCAUAaUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 86369 0.67 1
Target:  5'- aCUUUuACUUUUAAAGUAUUAUguAUu -3'
miRNA:   3'- -GAAAuUGAGGAUUUCAUAAUAguUAc -5'
28277 3' -36.1 NC_005902.1 + 85654 0.66 1
Target:  5'- uUUUAACUUUUAuGGUAUcAUUGAUGa -3'
miRNA:   3'- gAAAUUGAGGAUuUCAUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 84999 0.78 1
Target:  5'- -gUUAAUUCCUAAAGcAUUGUgGAUGa -3'
miRNA:   3'- gaAAUUGAGGAUUUCaUAAUAgUUAC- -5'
28277 3' -36.1 NC_005902.1 + 84067 0.66 1
Target:  5'- cCUUUAACUCUgcac-UAUcAUCAAUGg -3'
miRNA:   3'- -GAAAUUGAGGauuucAUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 84044 0.76 1
Target:  5'- cCUUUAACUCCUAAGaUAUcAUCAAc- -3'
miRNA:   3'- -GAAAUUGAGGAUUUcAUAaUAGUUac -5'
28277 3' -36.1 NC_005902.1 + 83800 0.73 1
Target:  5'- -gUUAACUCCUAAGGcAUUAaUGAUGu -3'
miRNA:   3'- gaAAUUGAGGAUUUCaUAAUaGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 82627 0.84 0.999476
Target:  5'- uUUUAACUCCUAAgauauuauugauguGGUGUUAUUGAUGa -3'
miRNA:   3'- gAAAUUGAGGAUU--------------UCAUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 82187 0.78 1
Target:  5'- cCUUUAACUCCaUAu--UGUUAUCAAUGa -3'
miRNA:   3'- -GAAAUUGAGG-AUuucAUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 82105 0.66 1
Target:  5'- uUUUAACUCCaugu-UGUUAUUGAUGa -3'
miRNA:   3'- gAAAUUGAGGauuucAUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 81997 0.86 0.997262
Target:  5'- cCUUUAAaUCCUAAGGUGUUAUUggUGa -3'
miRNA:   3'- -GAAAUUgAGGAUUUCAUAAUAGuuAC- -5'
28277 3' -36.1 NC_005902.1 + 81857 0.92 0.955232
Target:  5'- uCUUUAACUCCUAAGGcGUUAUUGAUGa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 81600 0.77 1
Target:  5'- ---cGAUUCaUAAAGUGUUAUCGAUGa -3'
miRNA:   3'- gaaaUUGAGgAUUUCAUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 81408 0.81 0.999981
Target:  5'- -aUUAACUCUUAAGGUGUUGUUAu-- -3'
miRNA:   3'- gaAAUUGAGGAUUUCAUAAUAGUuac -5'
28277 3' -36.1 NC_005902.1 + 81171 0.74 1
Target:  5'- cCUUUAACUCUUAAAaUAUUGUUAAc- -3'
miRNA:   3'- -GAAAUUGAGGAUUUcAUAAUAGUUac -5'
28277 3' -36.1 NC_005902.1 + 80861 0.94 0.922881
Target:  5'- -aUUAACUUCUAAAGUGUUAUCAAUa -3'
miRNA:   3'- gaAAUUGAGGAUUUCAUAAUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 80299 0.73 1
Target:  5'- uUUUuACUCCUGAGGUA--GUUGAUGc -3'
miRNA:   3'- gAAAuUGAGGAUUUCAUaaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 79481 0.71 1
Target:  5'- cCUUUGACUCUUGAAGUucac-CAAUa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCAuaauaGUUAc -5'
28277 3' -36.1 NC_005902.1 + 79327 0.73 1
Target:  5'- cCUUUGACUCUUAAAaUGcUAUCAAUa -3'
miRNA:   3'- -GAAAUUGAGGAUUUcAUaAUAGUUAc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.