miRNA display CGI


Results 81 - 100 of 211 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28277 3' -36.1 NC_005902.1 + 122653 0.76 1
Target:  5'- -aUUAAUUCUUAAGGUAUcAUUAAUGa -3'
miRNA:   3'- gaAAUUGAGGAUUUCAUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 97366 0.76 1
Target:  5'- uCUUUAACcUCUAAAGUGUaAUCAAUa -3'
miRNA:   3'- -GAAAUUGaGGAUUUCAUAaUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 55132 0.75 1
Target:  5'- uUUUAACUCUUAAGaUGUUAUCAAc- -3'
miRNA:   3'- gAAAUUGAGGAUUUcAUAAUAGUUac -5'
28277 3' -36.1 NC_005902.1 + 11440 0.75 1
Target:  5'- uCUUUAAUUCUUAAaaAGUAUUGUUGAUa -3'
miRNA:   3'- -GAAAUUGAGGAUU--UCAUAAUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 40738 0.74 1
Target:  5'- uUUUAACUCCaugc-UAUUGUCAAUGa -3'
miRNA:   3'- gAAAUUGAGGauuucAUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 83800 0.73 1
Target:  5'- -gUUAACUCCUAAGGcAUUAaUGAUGu -3'
miRNA:   3'- gaAAUUGAGGAUUUCaUAAUaGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 78735 0.72 1
Target:  5'- -cUUAACUCCUAAAGcGUUGaCAAc- -3'
miRNA:   3'- gaAAUUGAGGAUUUCaUAAUaGUUac -5'
28277 3' -36.1 NC_005902.1 + 75755 0.8 0.999996
Target:  5'- -cUUAACUCCUAAAGcaccAUCAAUGa -3'
miRNA:   3'- gaAAUUGAGGAUUUCauaaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 90491 0.81 0.999981
Target:  5'- cCUUUAACUCUUAAGGcAUcAUCGAUGa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 49984 0.83 0.999775
Target:  5'- cCUUUAACUCCUAAGGcAUcAUCAAUa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAaUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 143549 0.7 1
Target:  5'- uUUUAACUCCacauc-AUUGUCAAUGa -3'
miRNA:   3'- gAAAUUGAGGauuucaUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 42048 0.68 1
Target:  5'- uUUUAACUUCUAAGGcAUUAUUGcUGa -3'
miRNA:   3'- gAAAUUGAGGAUUUCaUAAUAGUuAC- -5'
28277 3' -36.1 NC_005902.1 + 86369 0.67 1
Target:  5'- aCUUUuACUUUUAAAGUAUUAUguAUu -3'
miRNA:   3'- -GAAAuUGAGGAUUUCAUAAUAguUAc -5'
28277 3' -36.1 NC_005902.1 + 34909 0.67 1
Target:  5'- uUUUAACUCCa----UAUUGUCAAUa -3'
miRNA:   3'- gAAAUUGAGGauuucAUAAUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 111037 0.66 1
Target:  5'- -gUUAACUUCUAAAaUAUcAUUAAUGa -3'
miRNA:   3'- gaAAUUGAGGAUUUcAUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 15804 0.94 0.909568
Target:  5'- cCUUUAACUCCUAAGGcAUUGUUAAUGa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 81857 0.92 0.955232
Target:  5'- uCUUUAACUCCUAAGGcGUUAUUGAUGa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 81997 0.86 0.997262
Target:  5'- cCUUUAAaUCCUAAGGUGUUAUUggUGa -3'
miRNA:   3'- -GAAAUUgAGGAUUUCAUAAUAGuuAC- -5'
28277 3' -36.1 NC_005902.1 + 134275 0.85 0.998779
Target:  5'- uCUUUAACUCCUAAGGcauUAUUAaCAAUGg -3'
miRNA:   3'- -GAAAUUGAGGAUUUC---AUAAUaGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 110170 0.84 0.999513
Target:  5'- cCUUUAAUUCCUAAGGcAUUGUCAGa- -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAAUAGUUac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.