miRNA display CGI


Results 101 - 120 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28277 3' -36.1 NC_005902.1 + 161775 0.78 1
Target:  5'- cCUUUAACaCCUAAGGUGUcAUUGAUGa -3'
miRNA:   3'- -GAAAUUGaGGAUUUCAUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 157919 0.77 1
Target:  5'- cCUUUAACUCCau--GUGUcAUCGAUGa -3'
miRNA:   3'- -GAAAUUGAGGauuuCAUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 87007 0.7 1
Target:  5'- cCUUUAAUcCCUAAGGUAUcAUUGAUa -3'
miRNA:   3'- -GAAAUUGaGGAUUUCAUAaUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 143929 0.66 1
Target:  5'- cCUUUAAUUCUUAAAacugaaagAUUGUCAAUa -3'
miRNA:   3'- -GAAAUUGAGGAUUUca------UAAUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 27731 0.76 1
Target:  5'- uCUUUAACUCCUAAGGcAUcAUCGccgAUGg -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAaUAGU---UAC- -5'
28277 3' -36.1 NC_005902.1 + 154657 0.76 1
Target:  5'- cCUUUAACUUUUAAGGcAUUAUCAAc- -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAAUAGUUac -5'
28277 3' -36.1 NC_005902.1 + 93292 0.75 1
Target:  5'- uCUUUAACUUUUAAAGcAUcAUCAAUGa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 84044 0.76 1
Target:  5'- cCUUUAACUCCUAAGaUAUcAUCAAc- -3'
miRNA:   3'- -GAAAUUGAGGAUUUcAUAaUAGUUac -5'
28277 3' -36.1 NC_005902.1 + 131236 0.77 1
Target:  5'- --gUAACUUCUAAAGUAUcAUCAAc- -3'
miRNA:   3'- gaaAUUGAGGAUUUCAUAaUAGUUac -5'
28277 3' -36.1 NC_005902.1 + 94618 0.76 1
Target:  5'- aUUUAACUCuuuaCUAAGGUAUUAUUGAUa -3'
miRNA:   3'- gAAAUUGAG----GAUUUCAUAAUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 27848 0.76 1
Target:  5'- uCUUUAACUCCUAAGGcAUcAUCGccgAUGg -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAaUAGU---UAC- -5'
28277 3' -36.1 NC_005902.1 + 94670 0.77 1
Target:  5'- -cUUAACUCCUAAGGcAUUGUCu--- -3'
miRNA:   3'- gaAAUUGAGGAUUUCaUAAUAGuuac -5'
28277 3' -36.1 NC_005902.1 + 150210 0.76 1
Target:  5'- -gUUAACUCCUAAuGUGUcAUCAAc- -3'
miRNA:   3'- gaAAUUGAGGAUUuCAUAaUAGUUac -5'
28277 3' -36.1 NC_005902.1 + 143953 0.67 1
Target:  5'- -cUUAACUCa--AGGcAUUAUCAAUGa -3'
miRNA:   3'- gaAAUUGAGgauUUCaUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 93715 0.76 1
Target:  5'- --cUGACUCCUAAAGUGUcAUUGAc- -3'
miRNA:   3'- gaaAUUGAGGAUUUCAUAaUAGUUac -5'
28277 3' -36.1 NC_005902.1 + 39266 0.76 1
Target:  5'- uUUUAACUUCUAAGGcAUUGUUAAUa -3'
miRNA:   3'- gAAAUUGAGGAUUUCaUAAUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 114990 0.7 1
Target:  5'- cCUUUAACUCUacaucgucaccgaUGAcauaacGUAUUAUCAAUGa -3'
miRNA:   3'- -GAAAUUGAGG-------------AUUu-----CAUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 50392 0.7 1
Target:  5'- -------aCCUAAGGUAUcAUCAAUGa -3'
miRNA:   3'- gaaauugaGGAUUUCAUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 170985 0.71 1
Target:  5'- -gUUAACUCUgaauGUGUUGUUggUGa -3'
miRNA:   3'- gaAAUUGAGGauuuCAUAAUAGuuAC- -5'
28277 3' -36.1 NC_005902.1 + 68108 0.71 1
Target:  5'- cCUUUAACUCUa----UAUUAUCGAUGa -3'
miRNA:   3'- -GAAAUUGAGGauuucAUAAUAGUUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.