miRNA display CGI


Results 121 - 140 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28277 3' -36.1 NC_005902.1 + 16179 0.75 1
Target:  5'- cCUUUAACUCCacaUcaucaacgacaauguAGAGUGUUAUUAAUGa -3'
miRNA:   3'- -GAAAUUGAGG---A---------------UUUCAUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 129205 0.75 1
Target:  5'- gUUUAACUCCUugaaaacuaGAAG-AUUGUCAAUa -3'
miRNA:   3'- gAAAUUGAGGA---------UUUCaUAAUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 99909 0.74 1
Target:  5'- cCUUUAAUUCCUAAGGcGUcAUCAAc- -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAaUAGUUac -5'
28277 3' -36.1 NC_005902.1 + 158167 0.97 0.834784
Target:  5'- cCUUUAAUUCCUAAAGUAUcAUCAAUGa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCAUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 53091 0.97 0.825121
Target:  5'- cCUUUAACUCUUAAGGUAUUGUUGAUGa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCAUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 51727 0.99 0.75166
Target:  5'- cCUUUAGCUUCUAAGGUAUUGUCAAUa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCAUAAUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 181205 1.02 0.62423
Target:  5'- cCUUUAACUCCUAAAGcGUUGUCAAUGa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 33387 1.03 0.600664
Target:  5'- uCUUUAACUCCUAAAGUAUcGUCGAUGa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCAUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 140108 0.97 0.825121
Target:  5'- aCUUUAACUCCUAAGaUAUUAUCAAUGa -3'
miRNA:   3'- -GAAAUUGAGGAUUUcAUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 162134 0.75 1
Target:  5'- gUUUAcC-CCUAAGGUGUUAUUGAUGa -3'
miRNA:   3'- gAAAUuGaGGAUUUCAUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 68108 0.71 1
Target:  5'- cCUUUAACUCUa----UAUUAUCGAUGa -3'
miRNA:   3'- -GAAAUUGAGGauuucAUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 170985 0.71 1
Target:  5'- -gUUAACUCUgaauGUGUUGUUggUGa -3'
miRNA:   3'- gaAAUUGAGGauuuCAUAAUAGuuAC- -5'
28277 3' -36.1 NC_005902.1 + 50392 0.7 1
Target:  5'- -------aCCUAAGGUAUcAUCAAUGa -3'
miRNA:   3'- gaaauugaGGAUUUCAUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 114990 0.7 1
Target:  5'- cCUUUAACUCUacaucgucaccgaUGAcauaacGUAUUAUCAAUGa -3'
miRNA:   3'- -GAAAUUGAGG-------------AUUu-----CAUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 63468 0.7 1
Target:  5'- cCUUUuAUUCUUAAAGUAUcGUUGAUGu -3'
miRNA:   3'- -GAAAuUGAGGAUUUCAUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 47294 0.7 1
Target:  5'- aUUUAACUCauaUcaucauugacaauauGAAGUAUUGUCAAUa -3'
miRNA:   3'- gAAAUUGAGg--A---------------UUUCAUAAUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 181351 0.7 1
Target:  5'- cCUUUAACUCUcAAAGcAUUA-CAGUGa -3'
miRNA:   3'- -GAAAUUGAGGaUUUCaUAAUaGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 84044 0.76 1
Target:  5'- cCUUUAACUCCUAAGaUAUcAUCAAc- -3'
miRNA:   3'- -GAAAUUGAGGAUUUcAUAaUAGUUac -5'
28277 3' -36.1 NC_005902.1 + 16307 0.74 1
Target:  5'- -aUUAACUCCUAAGGcaucauUAUUAaCAAUGc -3'
miRNA:   3'- gaAAUUGAGGAUUUC------AUAAUaGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 61760 0.74 1
Target:  5'- ----cACUCCUAAGGcAUUGUCAAc- -3'
miRNA:   3'- gaaauUGAGGAUUUCaUAAUAGUUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.