miRNA display CGI


Results 41 - 60 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28277 3' -36.1 NC_005902.1 + 85654 0.66 1
Target:  5'- uUUUAACUUUUAuGGUAUcAUUGAUGa -3'
miRNA:   3'- gAAAUUGAGGAUuUCAUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 26677 0.66 1
Target:  5'- -aUUAACUCCaugc-UGUUGUUAAUGa -3'
miRNA:   3'- gaAAUUGAGGauuucAUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 154904 0.66 1
Target:  5'- cCUUUAACUCCaaacaUcaucaauaacauGAAGUAUUGUUGAUa -3'
miRNA:   3'- -GAAAUUGAGG-----A------------UUUCAUAAUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 114794 0.66 1
Target:  5'- cCUUUAACUCUUAAAGc---AUCAc-- -3'
miRNA:   3'- -GAAAUUGAGGAUUUCauaaUAGUuac -5'
28277 3' -36.1 NC_005902.1 + 82105 0.66 1
Target:  5'- uUUUAACUCCaugu-UGUUAUUGAUGa -3'
miRNA:   3'- gAAAUUGAGGauuucAUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 11669 0.68 1
Target:  5'- uUUUAACUCC--AGGcGUUAUCAAc- -3'
miRNA:   3'- gAAAUUGAGGauUUCaUAAUAGUUac -5'
28277 3' -36.1 NC_005902.1 + 23599 0.68 1
Target:  5'- cCUUUAACUUUUAAAGcAUUGUUAu-- -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAAUAGUuac -5'
28277 3' -36.1 NC_005902.1 + 50392 0.7 1
Target:  5'- -------aCCUAAGGUAUcAUCAAUGa -3'
miRNA:   3'- gaaauugaGGAUUUCAUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 114990 0.7 1
Target:  5'- cCUUUAACUCUacaucgucaccgaUGAcauaacGUAUUAUCAAUGa -3'
miRNA:   3'- -GAAAUUGAGG-------------AUUu-----CAUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 63468 0.7 1
Target:  5'- cCUUUuAUUCUUAAAGUAUcGUUGAUGu -3'
miRNA:   3'- -GAAAuUGAGGAUUUCAUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 47294 0.7 1
Target:  5'- aUUUAACUCauaUcaucauugacaauauGAAGUAUUGUCAAUa -3'
miRNA:   3'- gAAAUUGAGg--A---------------UUUCAUAAUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 181351 0.7 1
Target:  5'- cCUUUAACUCUcAAAGcAUUA-CAGUGa -3'
miRNA:   3'- -GAAAUUGAGGaUUUCaUAAUaGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 167553 0.7 1
Target:  5'- cCUUUAAUUCCUAAAGc---AUCAuUGa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCauaaUAGUuAC- -5'
28277 3' -36.1 NC_005902.1 + 33268 0.69 1
Target:  5'- -aUUAACUCa--AGGUAUcAUCGAUGa -3'
miRNA:   3'- gaAAUUGAGgauUUCAUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 143775 0.69 1
Target:  5'- -gUUAACUCCUAAGauGUcAUUGaCAAUGa -3'
miRNA:   3'- gaAAUUGAGGAUUU--CA-UAAUaGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 10793 0.69 1
Target:  5'- uUUUAACUUUUAAAGUAUcGUUggUa -3'
miRNA:   3'- gAAAUUGAGGAUUUCAUAaUAGuuAc -5'
28277 3' -36.1 NC_005902.1 + 149347 0.69 1
Target:  5'- uUUUAACUCCUAAGGcUAgUA-UAGUGa -3'
miRNA:   3'- gAAAUUGAGGAUUUC-AUaAUaGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 20413 0.69 1
Target:  5'- -gUUAACUCCUAAGGc---AUCAuUGa -3'
miRNA:   3'- gaAAUUGAGGAUUUCauaaUAGUuAC- -5'
28277 3' -36.1 NC_005902.1 + 149499 0.68 1
Target:  5'- uUUUAAaUCCUAAGGcAUcAUCGAUGa -3'
miRNA:   3'- gAAAUUgAGGAUUUCaUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 52519 0.68 1
Target:  5'- --gUAACUCCUcauuaaugaugcuAAGcAUUGUCAAUGa -3'
miRNA:   3'- gaaAUUGAGGAu------------UUCaUAAUAGUUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.