miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28278 3' -40.7 NC_005902.1 + 52842 1.14 0.070222
Target:  5'- uCCUUUAACUCCAUACCGUUGUUAAUGa -3'
miRNA:   3'- -GGAAAUUGAGGUAUGGCAACAAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 26677 0.96 0.512204
Target:  5'- --aUUAACUCCAUGCUGUUGUUAAUGa -3'
miRNA:   3'- ggaAAUUGAGGUAUGGCAACAAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 75080 0.85 0.924664
Target:  5'- cCCUUUAACUCCuaAUG-CGUUGUUGAUGa -3'
miRNA:   3'- -GGAAAUUGAGG--UAUgGCAACAAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 166306 0.82 0.978607
Target:  5'- cCCUUcAACUCCAUACa-UUGUUAAUGa -3'
miRNA:   3'- -GGAAaUUGAGGUAUGgcAACAAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 82107 0.81 0.988648
Target:  5'- cCUUUUAACUCCAUGuuGUUaUUGAUGa -3'
miRNA:   3'- -GGAAAUUGAGGUAUggCAAcAAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 93541 0.81 0.988648
Target:  5'- cCCcUUAACUUCAcAUCGUUGUUAAUGa -3'
miRNA:   3'- -GGaAAUUGAGGUaUGGCAACAAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 8594 0.8 0.993653
Target:  5'- cUCUUUAACUCUAcACCaUUGUUAAUGa -3'
miRNA:   3'- -GGAAAUUGAGGUaUGGcAACAAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 40736 0.8 0.993653
Target:  5'- cCUUUUAACUCCAUGCUaUUGUcAAUGa -3'
miRNA:   3'- -GGAAAUUGAGGUAUGGcAACAaUUAC- -5'
28278 3' -40.7 NC_005902.1 + 35150 0.8 0.993653
Target:  5'- cCCUUUAACcCCAUAUUGUUGaUGAUGu -3'
miRNA:   3'- -GGAAAUUGaGGUAUGGCAACaAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 180958 0.8 0.994574
Target:  5'- cCCUUUAAC-CCAUGCUGUUGUc---- -3'
miRNA:   3'- -GGAAAUUGaGGUAUGGCAACAauuac -5'
28278 3' -40.7 NC_005902.1 + 76425 0.79 0.996092
Target:  5'- cUCUUUAAUUCCAcAgUGUUGUUGAUGa -3'
miRNA:   3'- -GGAAAUUGAGGUaUgGCAACAAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 25069 0.79 0.996709
Target:  5'- cCCUUUAACUCCuaaAgCGUUGUUGAc- -3'
miRNA:   3'- -GGAAAUUGAGGua-UgGCAACAAUUac -5'
28278 3' -40.7 NC_005902.1 + 184445 0.79 0.997243
Target:  5'- cCCUUUAACUCUuaaGgUGUUGUUAAUGa -3'
miRNA:   3'- -GGAAAUUGAGGua-UgGCAACAAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 82186 0.79 0.997703
Target:  5'- uCCUUUAACUCCAUAUUGUUaucAAUGa -3'
miRNA:   3'- -GGAAAUUGAGGUAUGGCAAcaaUUAC- -5'
28278 3' -40.7 NC_005902.1 + 167376 0.79 0.997703
Target:  5'- cCCUUUAACUCUAcACUGUUGccAGUGa -3'
miRNA:   3'- -GGAAAUUGAGGUaUGGCAACaaUUAC- -5'
28278 3' -40.7 NC_005902.1 + 6362 0.78 0.998097
Target:  5'- --gUUAACUCUAUGCUGUUGaUAAUGu -3'
miRNA:   3'- ggaAAUUGAGGUAUGGCAACaAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 113782 0.78 0.998717
Target:  5'- uCCUUUGAUUCCAUGuuGUUaaUAAUGa -3'
miRNA:   3'- -GGAAAUUGAGGUAUggCAAcaAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 181206 0.78 0.998717
Target:  5'- cCCUUUAACUCCuaaAgCGUUGUcAAUGa -3'
miRNA:   3'- -GGAAAUUGAGGua-UgGCAACAaUUAC- -5'
28278 3' -40.7 NC_005902.1 + 15803 0.77 0.999156
Target:  5'- uCCUUUAACUCCuaagGCa-UUGUUAAUGa -3'
miRNA:   3'- -GGAAAUUGAGGua--UGgcAACAAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 25183 0.77 0.999572
Target:  5'- uCCUUUAACU-CAUAUCaUUGUUGAUGa -3'
miRNA:   3'- -GGAAAUUGAgGUAUGGcAACAAUUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.