miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28278 3' -40.7 NC_005902.1 + 6362 0.78 0.998097
Target:  5'- --gUUAACUCUAUGCUGUUGaUAAUGu -3'
miRNA:   3'- ggaAAUUGAGGUAUGGCAACaAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 8594 0.8 0.993653
Target:  5'- cUCUUUAACUCUAcACCaUUGUUAAUGa -3'
miRNA:   3'- -GGAAAUUGAGGUaUGGcAACAAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 10734 0.71 1
Target:  5'- cCCUUUAACUCUuaagaUGUUGUUAAc- -3'
miRNA:   3'- -GGAAAUUGAGGuaug-GCAACAAUUac -5'
28278 3' -40.7 NC_005902.1 + 11128 0.69 1
Target:  5'- cCCUUUAAaUCCA---UGUUGUUGAUGc -3'
miRNA:   3'- -GGAAAUUgAGGUaugGCAACAAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 15803 0.77 0.999156
Target:  5'- uCCUUUAACUCCuaagGCa-UUGUUAAUGa -3'
miRNA:   3'- -GGAAAUUGAGGua--UGgcAACAAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 17055 0.69 1
Target:  5'- cCUUUUAACUCUAUGuuGUcaUUGAUGa -3'
miRNA:   3'- -GGAAAUUGAGGUAUggCAacAAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 23358 0.72 0.999999
Target:  5'- cCCUUUAAUUCUA---UGUUGUUAAUGc -3'
miRNA:   3'- -GGAAAUUGAGGUaugGCAACAAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 25069 0.79 0.996709
Target:  5'- cCCUUUAACUCCuaaAgCGUUGUUGAc- -3'
miRNA:   3'- -GGAAAUUGAGGua-UgGCAACAAUUac -5'
28278 3' -40.7 NC_005902.1 + 25120 0.66 1
Target:  5'- cCCUUUAACUCUAUGCUa--------- -3'
miRNA:   3'- -GGAAAUUGAGGUAUGGcaacaauuac -5'
28278 3' -40.7 NC_005902.1 + 25183 0.77 0.999572
Target:  5'- uCCUUUAACU-CAUAUCaUUGUUGAUGa -3'
miRNA:   3'- -GGAAAUUGAgGUAUGGcAACAAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 26677 0.96 0.512204
Target:  5'- --aUUAACUCCAUGCUGUUGUUAAUGa -3'
miRNA:   3'- ggaAAUUGAGGUAUGGCAACAAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 29276 0.7 1
Target:  5'- --aUUAACUCCAcAUUGUUGcUGAUGa -3'
miRNA:   3'- ggaAAUUGAGGUaUGGCAACaAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 33156 0.68 1
Target:  5'- aCCUUUAACUCUAUAUUGUc------- -3'
miRNA:   3'- -GGAAAUUGAGGUAUGGCAacaauuac -5'
28278 3' -40.7 NC_005902.1 + 33490 0.67 1
Target:  5'- uCCUUUAACUCUAUAUUGUc------- -3'
miRNA:   3'- -GGAAAUUGAGGUAUGGCAacaauuac -5'
28278 3' -40.7 NC_005902.1 + 34907 0.66 1
Target:  5'- uCUUUUAACUCCAUAUUGUc------- -3'
miRNA:   3'- -GGAAAUUGAGGUAUGGCAacaauuac -5'
28278 3' -40.7 NC_005902.1 + 35150 0.8 0.993653
Target:  5'- cCCUUUAACcCCAUAUUGUUGaUGAUGu -3'
miRNA:   3'- -GGAAAUUGaGGUAUGGCAACaAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 37319 0.72 0.999999
Target:  5'- cCCUUUAACUCCAUGuuGUc------- -3'
miRNA:   3'- -GGAAAUUGAGGUAUggCAacaauuac -5'
28278 3' -40.7 NC_005902.1 + 39158 0.67 1
Target:  5'- cCCcUUAACUCCuaaAaaGUUGUUGAUa -3'
miRNA:   3'- -GGaAAUUGAGGua-UggCAACAAUUAc -5'
28278 3' -40.7 NC_005902.1 + 39401 0.69 1
Target:  5'- cCUUUUAACUCCAUAUUGaugaugcuUUGUUAu-- -3'
miRNA:   3'- -GGAAAUUGAGGUAUGGC--------AACAAUuac -5'
28278 3' -40.7 NC_005902.1 + 40736 0.8 0.993653
Target:  5'- cCUUUUAACUCCAUGCUaUUGUcAAUGa -3'
miRNA:   3'- -GGAAAUUGAGGUAUGGcAACAaUUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.