miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28278 3' -40.7 NC_005902.1 + 52842 1.14 0.070222
Target:  5'- uCCUUUAACUCCAUACCGUUGUUAAUGa -3'
miRNA:   3'- -GGAAAUUGAGGUAUGGCAACAAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 23358 0.72 0.999999
Target:  5'- cCCUUUAAUUCUA---UGUUGUUAAUGc -3'
miRNA:   3'- -GGAAAUUGAGGUaugGCAACAAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 73624 0.72 0.999999
Target:  5'- cCCUUUAACUCUuaa--GUUGUUGAUa -3'
miRNA:   3'- -GGAAAUUGAGGuauggCAACAAUUAc -5'
28278 3' -40.7 NC_005902.1 + 105999 0.66 1
Target:  5'- cUCUUUAACUCCuaa--GUUGUUcucAAUGa -3'
miRNA:   3'- -GGAAAUUGAGGuauggCAACAA---UUAC- -5'
28278 3' -40.7 NC_005902.1 + 25069 0.79 0.996709
Target:  5'- cCCUUUAACUCCuaaAgCGUUGUUGAc- -3'
miRNA:   3'- -GGAAAUUGAGGua-UgGCAACAAUUac -5'
28278 3' -40.7 NC_005902.1 + 184445 0.79 0.997243
Target:  5'- cCCUUUAACUCUuaaGgUGUUGUUAAUGa -3'
miRNA:   3'- -GGAAAUUGAGGua-UgGCAACAAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 167376 0.79 0.997703
Target:  5'- cCCUUUAACUCUAcACUGUUGccAGUGa -3'
miRNA:   3'- -GGAAAUUGAGGUaUGGCAACaaUUAC- -5'
28278 3' -40.7 NC_005902.1 + 15803 0.77 0.999156
Target:  5'- uCCUUUAACUCCuaagGCa-UUGUUAAUGa -3'
miRNA:   3'- -GGAAAUUGAGGua--UGgcAACAAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 67425 0.73 0.999993
Target:  5'- uCCUUUAACUCUAUACUGUc------- -3'
miRNA:   3'- -GGAAAUUGAGGUAUGGCAacaauuac -5'
28278 3' -40.7 NC_005902.1 + 37319 0.72 0.999999
Target:  5'- cCCUUUAACUCCAUGuuGUc------- -3'
miRNA:   3'- -GGAAAUUGAGGUAUggCAacaauuac -5'
28278 3' -40.7 NC_005902.1 + 146653 0.73 0.999997
Target:  5'- aCCUUUAACUCUAcAUUGUcGUUAAUa -3'
miRNA:   3'- -GGAAAUUGAGGUaUGGCAaCAAUUAc -5'
28278 3' -40.7 NC_005902.1 + 81928 0.76 0.999796
Target:  5'- cCCUUUAACUCCGcaacaucauuaaUACUGUaaagUGUUAAUa -3'
miRNA:   3'- -GGAAAUUGAGGU------------AUGGCA----ACAAUUAc -5'
28278 3' -40.7 NC_005902.1 + 40736 0.8 0.993653
Target:  5'- cCUUUUAACUCCAUGCUaUUGUcAAUGa -3'
miRNA:   3'- -GGAAAUUGAGGUAUGGcAACAaUUAC- -5'
28278 3' -40.7 NC_005902.1 + 140898 0.72 0.999998
Target:  5'- uCCUUaAACUCCAUGuuGUUGa----- -3'
miRNA:   3'- -GGAAaUUGAGGUAUggCAACaauuac -5'
28278 3' -40.7 NC_005902.1 + 180958 0.8 0.994574
Target:  5'- cCCUUUAAC-CCAUGCUGUUGUc---- -3'
miRNA:   3'- -GGAAAUUGaGGUAUGGCAACAauuac -5'
28278 3' -40.7 NC_005902.1 + 25183 0.77 0.999572
Target:  5'- uCCUUUAACU-CAUAUCaUUGUUGAUGa -3'
miRNA:   3'- -GGAAAUUGAgGUAUGGcAACAAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 149906 0.72 0.999999
Target:  5'- uCCUUUAACUUUA---UGUUGUUAAUGa -3'
miRNA:   3'- -GGAAAUUGAGGUaugGCAACAAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 144089 0.72 0.999999
Target:  5'- aCCaUUUAACUCUAUACCacUGUUGAc- -3'
miRNA:   3'- -GG-AAAUUGAGGUAUGGcaACAAUUac -5'
28278 3' -40.7 NC_005902.1 + 76425 0.79 0.996092
Target:  5'- cUCUUUAAUUCCAcAgUGUUGUUGAUGa -3'
miRNA:   3'- -GGAAAUUGAGGUaUgGCAACAAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 82186 0.79 0.997703
Target:  5'- uCCUUUAACUCCAUAUUGUUaucAAUGa -3'
miRNA:   3'- -GGAAAUUGAGGUAUGGCAAcaaUUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.