miRNA display CGI


Results 1 - 20 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28278 5' -40.7 NC_005902.1 + 99893 0.66 1
Target:  5'- cGUCAUCAACAAUGuggaaUUaAAGAGUa-- -3'
miRNA:   3'- -CAGUAGUUGUUAUg----GAaUUCUCAauu -5'
28278 5' -40.7 NC_005902.1 + 8317 0.66 1
Target:  5'- uUCAUCAAUGAaGCUUUAGGAaUUAAu -3'
miRNA:   3'- cAGUAGUUGUUaUGGAAUUCUcAAUU- -5'
28278 5' -40.7 NC_005902.1 + 147567 0.66 1
Target:  5'- aUCAUCAACAAUGCUUUGu------- -3'
miRNA:   3'- cAGUAGUUGUUAUGGAAUucucaauu -5'
28278 5' -40.7 NC_005902.1 + 118750 0.66 1
Target:  5'- aUUAUCAAUAAUGuuU-AGGAGUUAAa -3'
miRNA:   3'- cAGUAGUUGUUAUggAaUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 58638 0.66 1
Target:  5'- --uGUCAAUGAcgUCUUAAGAGUUAAa -3'
miRNA:   3'- cagUAGUUGUUauGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 80089 0.66 1
Target:  5'- -gCAUCAAC--UACCUcAGGAGUa-- -3'
miRNA:   3'- caGUAGUUGuuAUGGAaUUCUCAauu -5'
28278 5' -40.7 NC_005902.1 + 26224 0.66 1
Target:  5'- aUCAUUGACGAUGgUgu-AGAGUUAAu -3'
miRNA:   3'- cAGUAGUUGUUAUgGaauUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 136334 0.66 1
Target:  5'- uGUCAUUAAUGAUAgUgu-GGAGUUAAa -3'
miRNA:   3'- -CAGUAGUUGUUAUgGaauUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 68450 0.66 1
Target:  5'- uGUCAUUAAUGAUGCagaguuaAAGGGUUAAu -3'
miRNA:   3'- -CAGUAGUUGUUAUGgaa----UUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 39426 0.66 1
Target:  5'- aUUAUCAGCAAUAa-UUcAGAGUUAAc -3'
miRNA:   3'- cAGUAGUUGUUAUggAAuUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 78991 0.66 1
Target:  5'- uGUUAUCAACAAUGCaaagcaUUGuugauaacaaugcAGGGUUAAa -3'
miRNA:   3'- -CAGUAGUUGUUAUGg-----AAU-------------UCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 20569 0.66 1
Target:  5'- --gAUCAACAguGUACag-AAGAGUUAAa -3'
miRNA:   3'- cagUAGUUGU--UAUGgaaUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 150196 0.66 1
Target:  5'- uGUCAUCAACAAUGCauu-AGuGUc-- -3'
miRNA:   3'- -CAGUAGUUGUUAUGgaauUCuCAauu -5'
28278 5' -40.7 NC_005902.1 + 162502 0.67 1
Target:  5'- aUCAUCAACAAUGu----AGAGUUAAc -3'
miRNA:   3'- cAGUAGUUGUUAUggaauUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 85140 0.67 1
Target:  5'- cGUCAUCAAUAAUGCuCUguguuGUUGAu -3'
miRNA:   3'- -CAGUAGUUGUUAUG-GAauucuCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 144305 0.67 1
Target:  5'- uGUUGUCAACAGUGgUau-AGAGUUAAa -3'
miRNA:   3'- -CAGUAGUUGUUAUgGaauUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 55227 0.67 1
Target:  5'- uGUCAUCAACGAUACUUUGn------- -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAAUucucaauu -5'
28278 5' -40.7 NC_005902.1 + 107312 0.67 1
Target:  5'- aUUAUUGACuauAAUGCCUaAAGGGUUAAa -3'
miRNA:   3'- cAGUAGUUG---UUAUGGAaUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 149483 0.67 1
Target:  5'- aUCAUCGAUGAUGUCUUAAGuGUa-- -3'
miRNA:   3'- cAGUAGUUGUUAUGGAAUUCuCAauu -5'
28278 5' -40.7 NC_005902.1 + 140047 0.67 1
Target:  5'- cGUCAUCAAUGAUGCaagGcgucauugacaacauGGAGUUAAa -3'
miRNA:   3'- -CAGUAGUUGUUAUGgaaU---------------UCUCAAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.