Results 1 - 20 of 220 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28278 | 5' | -40.7 | NC_005902.1 | + | 1526 | 0.71 | 0.999999 |
Target: 5'- -aUAUCAACAAcACCUUAGGAaUUAAu -3' miRNA: 3'- caGUAGUUGUUaUGGAAUUCUcAAUU- -5' |
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28278 | 5' | -40.7 | NC_005902.1 | + | 4369 | 0.71 | 0.999998 |
Target: 5'- uGUCAUUGAUAAUGCUUUAAGAa---- -3' miRNA: 3'- -CAGUAGUUGUUAUGGAAUUCUcaauu -5' |
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28278 | 5' | -40.7 | NC_005902.1 | + | 5527 | 0.7 | 1 |
Target: 5'- aUCAUUGACGAcACCUUAGaAGUUAAa -3' miRNA: 3'- cAGUAGUUGUUaUGGAAUUcUCAAUU- -5' |
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28278 | 5' | -40.7 | NC_005902.1 | + | 6386 | 0.76 | 0.999496 |
Target: 5'- -----aAAUAAUGCCUUAAGAGUUAAa -3' miRNA: 3'- caguagUUGUUAUGGAAUUCUCAAUU- -5' |
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28278 | 5' | -40.7 | NC_005902.1 | + | 8317 | 0.66 | 1 |
Target: 5'- uUCAUCAAUGAaGCUUUAGGAaUUAAu -3' miRNA: 3'- cAGUAGUUGUUaUGGAAUUCUcAAUU- -5' |
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28278 | 5' | -40.7 | NC_005902.1 | + | 8380 | 0.69 | 1 |
Target: 5'- aUCAUUAACAAUGgUgu-AGAGUUAAa -3' miRNA: 3'- cAGUAGUUGUUAUgGaauUCUCAAUU- -5' |
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28278 | 5' | -40.7 | NC_005902.1 | + | 8502 | 0.79 | 0.993602 |
Target: 5'- -gCAUCAACAGcACCUcAAGAGUUAAc -3' miRNA: 3'- caGUAGUUGUUaUGGAaUUCUCAAUU- -5' |
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28278 | 5' | -40.7 | NC_005902.1 | + | 8559 | 0.9 | 0.697074 |
Target: 5'- uGUCAUCGACAAUGuuUUAGGAGUUAAg -3' miRNA: 3'- -CAGUAGUUGUUAUggAAUUCUCAAUU- -5' |
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28278 | 5' | -40.7 | NC_005902.1 | + | 10494 | 0.78 | 0.995386 |
Target: 5'- aUUAUCGAUAAUGCCUUAGGAaUUAAa -3' miRNA: 3'- cAGUAGUUGUUAUGGAAUUCUcAAUU- -5' |
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28278 | 5' | -40.7 | NC_005902.1 | + | 10522 | 0.73 | 0.999978 |
Target: 5'- --aGUUAACAAcAUCUUAAGAGUUAAa -3' miRNA: 3'- cagUAGUUGUUaUGGAAUUCUCAAUU- -5' |
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28278 | 5' | -40.7 | NC_005902.1 | + | 10580 | 0.7 | 1 |
Target: 5'- cGUUAcCAACGAUACUUUAAaAGUUAAa -3' miRNA: 3'- -CAGUaGUUGUUAUGGAAUUcUCAAUU- -5' |
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28278 | 5' | -40.7 | NC_005902.1 | + | 11211 | 0.94 | 0.536974 |
Target: 5'- uGUCAUUGAUGAUGCCUUAAGAGUUAAg -3' miRNA: 3'- -CAGUAGUUGUUAUGGAAUUCUCAAUU- -5' |
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28278 | 5' | -40.7 | NC_005902.1 | + | 11281 | 0.97 | 0.391293 |
Target: 5'- aUCAUCAAUGAUGCCUUAGGAGUUAAa -3' miRNA: 3'- cAGUAGUUGUUAUGGAAUUCUCAAUU- -5' |
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28278 | 5' | -40.7 | NC_005902.1 | + | 11656 | 0.81 | 0.980378 |
Target: 5'- cGUUAUCAACAAUACUUUuuaagaauuaAAGAGUUAGa -3' miRNA: 3'- -CAGUAGUUGUUAUGGAA----------UUCUCAAUU- -5' |
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28278 | 5' | -40.7 | NC_005902.1 | + | 16017 | 0.99 | 0.337207 |
Target: 5'- aUCAUUAACAAUGCCUUAGGAGUUAAa -3' miRNA: 3'- cAGUAGUUGUUAUGGAAUUCUCAAUU- -5' |
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28278 | 5' | -40.7 | NC_005902.1 | + | 16094 | 0.79 | 0.992523 |
Target: 5'- uGUUAaUAAUGAUGCCUUAGGAGUUAAu -3' miRNA: 3'- -CAGUaGUUGUUAUGGAAUUCUCAAUU- -5' |
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28278 | 5' | -40.7 | NC_005902.1 | + | 17020 | 1 | 0.273889 |
Target: 5'- uGUCAUCAAUGAUGCCUUAGGAGUUAAa -3' miRNA: 3'- -CAGUAGUUGUUAUGGAAUUCUCAAUU- -5' |
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28278 | 5' | -40.7 | NC_005902.1 | + | 20200 | 0.94 | 0.503838 |
Target: 5'- uGUUAUCAAUGAUGCCUUAGGAGUUAAc -3' miRNA: 3'- -CAGUAGUUGUUAUGGAAUUCUCAAUU- -5' |
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28278 | 5' | -40.7 | NC_005902.1 | + | 20269 | 0.72 | 0.999992 |
Target: 5'- aUCAUUGACAug-UCUUAAGAGUUAAa -3' miRNA: 3'- cAGUAGUUGUuauGGAAUUCUCAAUU- -5' |
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28278 | 5' | -40.7 | NC_005902.1 | + | 20434 | 0.91 | 0.662793 |
Target: 5'- aUUAUCAAUGAUGCCUUAGGAGUUAAc -3' miRNA: 3'- cAGUAGUUGUUAUGGAAUUCUCAAUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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