miRNA display CGI


Results 1 - 20 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28278 5' -40.7 NC_005902.1 + 1526 0.71 0.999999
Target:  5'- -aUAUCAACAAcACCUUAGGAaUUAAu -3'
miRNA:   3'- caGUAGUUGUUaUGGAAUUCUcAAUU- -5'
28278 5' -40.7 NC_005902.1 + 4369 0.71 0.999998
Target:  5'- uGUCAUUGAUAAUGCUUUAAGAa---- -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAAUUCUcaauu -5'
28278 5' -40.7 NC_005902.1 + 5527 0.7 1
Target:  5'- aUCAUUGACGAcACCUUAGaAGUUAAa -3'
miRNA:   3'- cAGUAGUUGUUaUGGAAUUcUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 6386 0.76 0.999496
Target:  5'- -----aAAUAAUGCCUUAAGAGUUAAa -3'
miRNA:   3'- caguagUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 8317 0.66 1
Target:  5'- uUCAUCAAUGAaGCUUUAGGAaUUAAu -3'
miRNA:   3'- cAGUAGUUGUUaUGGAAUUCUcAAUU- -5'
28278 5' -40.7 NC_005902.1 + 8380 0.69 1
Target:  5'- aUCAUUAACAAUGgUgu-AGAGUUAAa -3'
miRNA:   3'- cAGUAGUUGUUAUgGaauUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 8502 0.79 0.993602
Target:  5'- -gCAUCAACAGcACCUcAAGAGUUAAc -3'
miRNA:   3'- caGUAGUUGUUaUGGAaUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 8559 0.9 0.697074
Target:  5'- uGUCAUCGACAAUGuuUUAGGAGUUAAg -3'
miRNA:   3'- -CAGUAGUUGUUAUggAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 10494 0.78 0.995386
Target:  5'- aUUAUCGAUAAUGCCUUAGGAaUUAAa -3'
miRNA:   3'- cAGUAGUUGUUAUGGAAUUCUcAAUU- -5'
28278 5' -40.7 NC_005902.1 + 10522 0.73 0.999978
Target:  5'- --aGUUAACAAcAUCUUAAGAGUUAAa -3'
miRNA:   3'- cagUAGUUGUUaUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 10580 0.7 1
Target:  5'- cGUUAcCAACGAUACUUUAAaAGUUAAa -3'
miRNA:   3'- -CAGUaGUUGUUAUGGAAUUcUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 11211 0.94 0.536974
Target:  5'- uGUCAUUGAUGAUGCCUUAAGAGUUAAg -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 11281 0.97 0.391293
Target:  5'- aUCAUCAAUGAUGCCUUAGGAGUUAAa -3'
miRNA:   3'- cAGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 11656 0.81 0.980378
Target:  5'- cGUUAUCAACAAUACUUUuuaagaauuaAAGAGUUAGa -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAA----------UUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 16017 0.99 0.337207
Target:  5'- aUCAUUAACAAUGCCUUAGGAGUUAAa -3'
miRNA:   3'- cAGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 16094 0.79 0.992523
Target:  5'- uGUUAaUAAUGAUGCCUUAGGAGUUAAu -3'
miRNA:   3'- -CAGUaGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 17020 1 0.273889
Target:  5'- uGUCAUCAAUGAUGCCUUAGGAGUUAAa -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 20200 0.94 0.503838
Target:  5'- uGUUAUCAAUGAUGCCUUAGGAGUUAAc -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 20269 0.72 0.999992
Target:  5'- aUCAUUGACAug-UCUUAAGAGUUAAa -3'
miRNA:   3'- cAGUAGUUGUuauGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 20434 0.91 0.662793
Target:  5'- aUUAUCAAUGAUGCCUUAGGAGUUAAc -3'
miRNA:   3'- cAGUAGUUGUUAUGGAAUUCUCAAUU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.