miRNA display CGI


Results 1 - 20 of 220 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28278 5' -40.7 NC_005902.1 + 37354 1 0.273889
Target:  5'- cGUCAUCGAUGAUGCCUUAGGAGUUAAa -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 106108 0.87 0.833905
Target:  5'- -gCAUUAAUGAUGCCUUAGGAGUUAAa -3'
miRNA:   3'- caGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 27633 0.86 0.852122
Target:  5'- -cCAUCGGCGAUgauGCCUUAGGAGUUAAa -3'
miRNA:   3'- caGUAGUUGUUA---UGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 80089 0.66 1
Target:  5'- -gCAUCAAC--UACCUcAGGAGUa-- -3'
miRNA:   3'- caGUAGUUGuuAUGGAaUUCUCAauu -5'
28278 5' -40.7 NC_005902.1 + 20200 0.94 0.503838
Target:  5'- uGUUAUCAAUGAUGCCUUAGGAGUUAAc -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 100357 0.94 0.51479
Target:  5'- uGUCAUCAAUGAUGCCUUAAGAGUa-- -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAAUUCUCAauu -5'
28278 5' -40.7 NC_005902.1 + 11211 0.94 0.536974
Target:  5'- uGUCAUUGAUGAUGCCUUAAGAGUUAAg -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 156498 0.9 0.697074
Target:  5'- aUCAUUGAUGAUGCCUUAAGAGUUAAa -3'
miRNA:   3'- cAGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 82416 0.89 0.752651
Target:  5'- -aCAUCAAUAAUAUCUUAGGAGUUAAa -3'
miRNA:   3'- caGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 96073 0.87 0.824442
Target:  5'- uGUUGUUGAUAAUGCCUUAGGAGUUAAa -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 158051 0.89 0.763415
Target:  5'- uGUCAUCAACAAcAUCUUAAGGGUUAAc -3'
miRNA:   3'- -CAGUAGUUGUUaUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 67208 0.89 0.741753
Target:  5'- -gCAUCAauaACAAUGCCUUAGGAGUUAAa -3'
miRNA:   3'- caGUAGU---UGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 33172 0.99 0.312279
Target:  5'- uGUCAUCGACGAUACUUUAGGAGUUAAa -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 61552 0.88 0.784485
Target:  5'- aUCGUUGACAAUGCCUUAGGAGUg-- -3'
miRNA:   3'- cAGUAGUUGUUAUGGAAUUCUCAauu -5'
28278 5' -40.7 NC_005902.1 + 52877 0.97 0.381895
Target:  5'- cGUCAUCAACAAUACCUU-AGAGUUAAa -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAAuUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 172698 0.9 0.719604
Target:  5'- uGUUGUCAAUGAUGCCUUAGGGGUUAAc -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 94458 0.88 0.804861
Target:  5'- uGUUAUaGACAAUGCCUUAGGAGUUAAg -3'
miRNA:   3'- -CAGUAgUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 137633 0.86 0.852122
Target:  5'- -aCAUCAAUGAUACUUUAGGAGUUAAa -3'
miRNA:   3'- caGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 134247 0.95 0.461111
Target:  5'- uGUUAUCAACAAUGCUUUAAGAGUUAAc -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 167522 0.94 0.525838
Target:  5'- aUCAUUAAUAAUGCCUUAGGAGUUAAa -3'
miRNA:   3'- cAGUAGUUGUUAUGGAAUUCUCAAUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.