miRNA display CGI


Results 61 - 80 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28278 5' -40.7 NC_005902.1 + 116905 0.69 1
Target:  5'- aUCAUCAAUAAUGCUUUAGGuauUUAc -3'
miRNA:   3'- cAGUAGUUGUUAUGGAAUUCuc-AAUu -5'
28278 5' -40.7 NC_005902.1 + 134333 0.69 1
Target:  5'- uGUCAUCAACGAUGCUUUGu------- -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAAUucucaauu -5'
28278 5' -40.7 NC_005902.1 + 154870 0.69 1
Target:  5'- aUUGUUGAUAAUGCCUUAAaAGUUAAa -3'
miRNA:   3'- cAGUAGUUGUUAUGGAAUUcUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 131027 0.7 1
Target:  5'- uGUUAUCGAUGAcGCCUUAgaaguuaaAGGGUUAAa -3'
miRNA:   3'- -CAGUAGUUGUUaUGGAAU--------UCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 40949 0.68 1
Target:  5'- aUCAUUGACAAUAgCau-GGAGUUAAa -3'
miRNA:   3'- cAGUAGUUGUUAUgGaauUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 55345 0.68 1
Target:  5'- aUUGUUGAUAAcAUCUUAAGAGUUAAa -3'
miRNA:   3'- cAGUAGUUGUUaUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 113950 0.68 1
Target:  5'- aUUGUUAAUGAUGCUgcuUUAGGAGUUAAa -3'
miRNA:   3'- cAGUAGUUGUUAUGG---AAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 143761 0.68 1
Target:  5'- uGUCAUUGACAAUGaugu-GGAGUUAAa -3'
miRNA:   3'- -CAGUAGUUGUUAUggaauUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 169288 0.68 1
Target:  5'- uGUC-UCAACGAcGCCUUAAGAa---- -3'
miRNA:   3'- -CAGuAGUUGUUaUGGAAUUCUcaauu -5'
28278 5' -40.7 NC_005902.1 + 166092 0.71 0.999999
Target:  5'- uGUCAUUAACAAUAgUau-GGAGUUGAa -3'
miRNA:   3'- -CAGUAGUUGUUAUgGaauUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 181137 0.71 0.999999
Target:  5'- -aUAUCAcugUAAUGCUUUGAGAGUUAAa -3'
miRNA:   3'- caGUAGUu--GUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 122804 0.71 0.999999
Target:  5'- uGUUGUUAAgGAUGCCUUAGGAaUUAAa -3'
miRNA:   3'- -CAGUAGUUgUUAUGGAAUUCUcAAUU- -5'
28278 5' -40.7 NC_005902.1 + 1526 0.71 0.999999
Target:  5'- -aUAUCAACAAcACCUUAGGAaUUAAu -3'
miRNA:   3'- caGUAGUUGUUaUGGAAUUCUcAAUU- -5'
28278 5' -40.7 NC_005902.1 + 34939 0.71 0.999999
Target:  5'- aUCAUCAACAAUAU----GGGGUUAAa -3'
miRNA:   3'- cAGUAGUUGUUAUGgaauUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 137962 0.71 0.999998
Target:  5'- aUUAUUAAUGAUGCCUUAGGAaUUAAa -3'
miRNA:   3'- cAGUAGUUGUUAUGGAAUUCUcAAUU- -5'
28278 5' -40.7 NC_005902.1 + 65796 0.71 0.999998
Target:  5'- aUUAUUAAC---ACCUUAGGAGUUAGa -3'
miRNA:   3'- cAGUAGUUGuuaUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 136396 0.71 0.999998
Target:  5'- uGUUGUUAACAAUAUUUUAGGuGUUAAc -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAAUUCuCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 157952 0.71 0.999998
Target:  5'- uGUCAUUGAUGAUACUUUAGGAaUUAAa -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAAUUCUcAAUU- -5'
28278 5' -40.7 NC_005902.1 + 4369 0.71 0.999998
Target:  5'- uGUCAUUGAUAAUGCUUUAAGAa---- -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAAUUCUcaauu -5'
28278 5' -40.7 NC_005902.1 + 85492 0.71 0.999998
Target:  5'- -aCAUgAGCAcauAUaaGCCUUAAGAGUUAAa -3'
miRNA:   3'- caGUAgUUGU---UA--UGGAAUUCUCAAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.