miRNA display CGI


Results 21 - 40 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28279 3' -45.1 NC_005902.1 + 5566 0.67 0.99999
Target:  5'- aUACUCUUUAACUUuauaucaucaucaaUGauaugaaGCAUCAUUGAc -3'
miRNA:   3'- -AUGGGAAAUUGAG--------------AUg------CGUAGUAACU- -5'
28279 3' -45.1 NC_005902.1 + 63471 0.67 0.999987
Target:  5'- aAUCCUUUuAUUCUuaaaGUAUCGUUGAu -3'
miRNA:   3'- aUGGGAAAuUGAGAug--CGUAGUAACU- -5'
28279 3' -45.1 NC_005902.1 + 161772 0.67 0.999987
Target:  5'- aAUCCUUUAACacCUAagGUGUCAUUGAu -3'
miRNA:   3'- aUGGGAAAUUGa-GAUg-CGUAGUAACU- -5'
28279 3' -45.1 NC_005902.1 + 116758 0.67 0.999983
Target:  5'- aACCCUUU-ACUCcUAaaaCAUCAUUGAc -3'
miRNA:   3'- aUGGGAAAuUGAG-AUgc-GUAGUAACU- -5'
28279 3' -45.1 NC_005902.1 + 8479 0.67 0.999983
Target:  5'- aACCCUUUAACccCUcACGCAcCAaUGAu -3'
miRNA:   3'- aUGGGAAAUUGa-GA-UGCGUaGUaACU- -5'
28279 3' -45.1 NC_005902.1 + 158170 0.67 0.999983
Target:  5'- aACCCUUUAAUUCcuaaaGUAUCAUcaaUGAc -3'
miRNA:   3'- aUGGGAAAUUGAGaug--CGUAGUA---ACU- -5'
28279 3' -45.1 NC_005902.1 + 173727 0.67 0.999983
Target:  5'- uUACCCUUUAACUUcuuUAUGCAcCAa--- -3'
miRNA:   3'- -AUGGGAAAUUGAG---AUGCGUaGUaacu -5'
28279 3' -45.1 NC_005902.1 + 11064 0.67 0.999983
Target:  5'- aACUaUUUAACUcCUAagGCAUCAUUGAu -3'
miRNA:   3'- aUGGgAAAUUGA-GAUg-CGUAGUAACU- -5'
28279 3' -45.1 NC_005902.1 + 46259 0.67 0.999976
Target:  5'- aAUCCUUUAACUCaaAUGCAUUgaUGAu -3'
miRNA:   3'- aUGGGAAAUUGAGa-UGCGUAGuaACU- -5'
28279 3' -45.1 NC_005902.1 + 67422 0.67 0.999976
Target:  5'- aUAUCCUUUAACUCUAuacUGuCAUCAa--- -3'
miRNA:   3'- -AUGGGAAAUUGAGAU---GC-GUAGUaacu -5'
28279 3' -45.1 NC_005902.1 + 37316 0.68 0.999967
Target:  5'- aUACCCUUUAACUCcAUGuUGUCAUc-- -3'
miRNA:   3'- -AUGGGAAAUUGAGaUGC-GUAGUAacu -5'
28279 3' -45.1 NC_005902.1 + 68112 0.68 0.999967
Target:  5'- aUAUCCUUUAACUCUAUauUAUCGaUGAu -3'
miRNA:   3'- -AUGGGAAAUUGAGAUGc-GUAGUaACU- -5'
28279 3' -45.1 NC_005902.1 + 184698 0.68 0.999967
Target:  5'- uUACCCUUUAACUUcACauCAUCAUcaaUGAu -3'
miRNA:   3'- -AUGGGAAAUUGAGaUGc-GUAGUA---ACU- -5'
28279 3' -45.1 NC_005902.1 + 48163 0.68 0.999967
Target:  5'- aACCCUUUAACUCcuaaaGUAUUAUcaaUGAu -3'
miRNA:   3'- aUGGGAAAUUGAGaug--CGUAGUA---ACU- -5'
28279 3' -45.1 NC_005902.1 + 67877 0.68 0.999967
Target:  5'- aAUCCUUUgGACUCUuaAgGCAUCAUcGAu -3'
miRNA:   3'- aUGGGAAA-UUGAGA--UgCGUAGUAaCU- -5'
28279 3' -45.1 NC_005902.1 + 136727 0.68 0.999955
Target:  5'- aUAUUCUUUAACUCcAUGuUGUCAUUGAc -3'
miRNA:   3'- -AUGGGAAAUUGAGaUGC-GUAGUAACU- -5'
28279 3' -45.1 NC_005902.1 + 82109 0.68 0.999955
Target:  5'- cACCUUUUAACUCcAUGuUGUUAUUGAu -3'
miRNA:   3'- aUGGGAAAUUGAGaUGC-GUAGUAACU- -5'
28279 3' -45.1 NC_005902.1 + 85119 0.68 0.999955
Target:  5'- aUACCCUUauuaAACUCcAUGCGUCAUc-- -3'
miRNA:   3'- -AUGGGAAa---UUGAGaUGCGUAGUAacu -5'
28279 3' -45.1 NC_005902.1 + 123085 0.68 0.999939
Target:  5'- aACCCUUUAAUUCcuaAgGCAUCAUc-- -3'
miRNA:   3'- aUGGGAAAUUGAGa--UgCGUAGUAacu -5'
28279 3' -45.1 NC_005902.1 + 25434 0.68 0.999919
Target:  5'- uUACCUUUUAACUCaagGCGuUGUCAaUGAc -3'
miRNA:   3'- -AUGGGAAAUUGAGa--UGC-GUAGUaACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.