miRNA display CGI


Results 41 - 60 of 133 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28279 5' -40.5 NC_005902.1 + 68451 0.66 1
Target:  5'- aUGUCAuuaAUGAUG-C---AGAGUUAAAGg -3'
miRNA:   3'- -ACAGU---UACUGCaGaauUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 158128 0.66 1
Target:  5'- -aUCGAUGACacau--GGAGUUAAAGg -3'
miRNA:   3'- acAGUUACUGcagaauUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 76557 0.66 1
Target:  5'- cGUUAAUGAUcaugu-GGAGUUAAAGa -3'
miRNA:   3'- aCAGUUACUGcagaauUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 76692 0.68 1
Target:  5'- -uUCAGaGAUGgaauauugcuuuaacUCUUGAGAGUUAAAGc -3'
miRNA:   3'- acAGUUaCUGC---------------AGAAUUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 68038 0.68 1
Target:  5'- aUGUCAuUGACaaugcUUUAGGAGUUAAAa -3'
miRNA:   3'- -ACAGUuACUGca---GAAUUCUCAAUUUc -5'
28279 5' -40.5 NC_005902.1 + 48276 0.68 1
Target:  5'- uUGUCAAUGACacaaaGUauugcugacgaugcCUUAGGAGUUAuaaAAGg -3'
miRNA:   3'- -ACAGUUACUG-----CA--------------GAAUUCUCAAU---UUC- -5'
28279 5' -40.5 NC_005902.1 + 42360 0.71 1
Target:  5'- uUGUCAAUGACaUgUUuGGAGUUAAc- -3'
miRNA:   3'- -ACAGUUACUGcAgAAuUCUCAAUUuc -5'
28279 5' -40.5 NC_005902.1 + 8560 0.71 1
Target:  5'- aUGUCAucGACaauGUUUUAGGAGUUAAGa -3'
miRNA:   3'- -ACAGUuaCUG---CAGAAUUCUCAAUUUc -5'
28279 5' -40.5 NC_005902.1 + 89104 0.7 1
Target:  5'- uUGUCGAUGAUGUgU----AGUUAAAGg -3'
miRNA:   3'- -ACAGUUACUGCAgAauucUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 55344 0.7 1
Target:  5'- uUGUUGAUaACaUCUUAAGAGUUAAAa -3'
miRNA:   3'- -ACAGUUAcUGcAGAAUUCUCAAUUUc -5'
28279 5' -40.5 NC_005902.1 + 78942 0.7 1
Target:  5'- uUGUCA---ACGcUUUAGGAGUUAAGGg -3'
miRNA:   3'- -ACAGUuacUGCaGAAUUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 102180 0.7 1
Target:  5'- -aUCAAUGACGaUUUAGGAGUa---- -3'
miRNA:   3'- acAGUUACUGCaGAAUUCUCAauuuc -5'
28279 5' -40.5 NC_005902.1 + 166094 0.69 1
Target:  5'- gUGUUAAUGACacCUUAGaAGUUAAAGg -3'
miRNA:   3'- -ACAGUUACUGcaGAAUUcUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 16031 0.69 1
Target:  5'- -aUCAAUGAUGgggCaucauuaacaaugccUUAGGAGUUAAAGg -3'
miRNA:   3'- acAGUUACUGCa--G---------------AAUUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 95689 0.68 1
Target:  5'- uUGUUGAUGAUgcuuuGUgguauuaaucauacCUUAAGAGUUAAGGg -3'
miRNA:   3'- -ACAGUUACUG-----CA--------------GAAUUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 177488 0.68 1
Target:  5'- cUGUUGAUGAguUGUCaacaaugcuUUGAGAGUUAGAa -3'
miRNA:   3'- -ACAGUUACU--GCAG---------AAUUCUCAAUUUc -5'
28279 5' -40.5 NC_005902.1 + 39613 0.68 1
Target:  5'- cUGUCAGUGACcuuucaGUUUUuaaAAGAGUUAu-- -3'
miRNA:   3'- -ACAGUUACUG------CAGAA---UUCUCAAUuuc -5'
28279 5' -40.5 NC_005902.1 + 58811 0.72 0.999999
Target:  5'- -aUCAAUGAUG-Cgu-AGAGUUAAAGg -3'
miRNA:   3'- acAGUUACUGCaGaauUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 137635 0.72 0.999999
Target:  5'- -aUCAAUGAUacUUUAGGAGUUAAAGg -3'
miRNA:   3'- acAGUUACUGcaGAAUUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 67637 0.72 0.999999
Target:  5'- uUGUUGAUGACaGUau--AGAGUUAAAGg -3'
miRNA:   3'- -ACAGUUACUG-CAgaauUCUCAAUUUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.