miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2828 3' -56.4 NC_001491.2 + 121353 0.67 0.895756
Target:  5'- cGGAGCUgGGC--UGGGC-CGGGGUCGc -3'
miRNA:   3'- -CCUCGGgCUGcuGCUCGaGCUCUAGC- -5'
2828 3' -56.4 NC_001491.2 + 121378 0.67 0.895756
Target:  5'- cGGAGCUgGGC--UGGGC-CGGGGUCGc -3'
miRNA:   3'- -CCUCGGgCUGcuGCUCGaGCUCUAGC- -5'
2828 3' -56.4 NC_001491.2 + 145958 0.67 0.889218
Target:  5'- uGGGGCCUGcgccuCGGCGuAGCgCGAGG-CGg -3'
miRNA:   3'- -CCUCGGGCu----GCUGC-UCGaGCUCUaGC- -5'
2828 3' -56.4 NC_001491.2 + 146184 0.67 0.868318
Target:  5'- cGucCCCGAUGugGGGCagGGGGUUGg -3'
miRNA:   3'- cCucGGGCUGCugCUCGagCUCUAGC- -5'
2828 3' -56.4 NC_001491.2 + 36236 0.68 0.829489
Target:  5'- aGGcGUUCuACGGCGAGCcCGAGGUCu -3'
miRNA:   3'- -CCuCGGGcUGCUGCUCGaGCUCUAGc -5'
2828 3' -56.4 NC_001491.2 + 4751 0.68 0.821178
Target:  5'- uGGAGCCUGucUGGCGGGaaccCUCGAGG-CGa -3'
miRNA:   3'- -CCUCGGGCu-GCUGCUC----GAGCUCUaGC- -5'
2828 3' -56.4 NC_001491.2 + 101697 0.69 0.777306
Target:  5'- uGGAGgCCGugGugGAGCUgGccAGGUg- -3'
miRNA:   3'- -CCUCgGGCugCugCUCGAgC--UCUAgc -5'
2828 3' -56.4 NC_001491.2 + 140252 0.7 0.730319
Target:  5'- aGGAGUCCGAgcgggGACGGGgaCGGGggCGg -3'
miRNA:   3'- -CCUCGGGCUg----CUGCUCgaGCUCuaGC- -5'
2828 3' -56.4 NC_001491.2 + 114479 0.71 0.651339
Target:  5'- uGGAGCCCGACGcCGAGgC-CGAGc--- -3'
miRNA:   3'- -CCUCGGGCUGCuGCUC-GaGCUCuagc -5'
2828 3' -56.4 NC_001491.2 + 148784 0.74 0.522485
Target:  5'- cGGGGCUCGGCGGCGGGgagcCUCGGuGAUgGg -3'
miRNA:   3'- -CCUCGGGCUGCUGCUC----GAGCU-CUAgC- -5'
2828 3' -56.4 NC_001491.2 + 114335 1.12 0.002217
Target:  5'- cGGAGCCCGACGACGAGCUCGAGAUCGa -3'
miRNA:   3'- -CCUCGGGCUGCUGCUCGAGCUCUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.