miRNA display CGI


Results 81 - 100 of 112 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28281 3' -43.3 NC_005902.1 + 55119 0.74 0.999089
Target:  5'- cCUUUAAUUCC--GCAuUGUCAUUGAUGa -3'
miRNA:   3'- -GGAAUUGAGGauUGU-GCAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 93718 0.75 0.997995
Target:  5'- cCCcUGACUCCUAAagUGUCAUUGAc- -3'
miRNA:   3'- -GGaAUUGAGGAUUguGCAGUAACUac -5'
28281 3' -43.3 NC_005902.1 + 137845 0.75 0.997592
Target:  5'- cCUUUAACUCCUAAaguaUCAUUGAUGu -3'
miRNA:   3'- -GGAAUUGAGGAUUgugcAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 13052 0.75 0.997124
Target:  5'- cCUUUAACUCCacaucaucaaUGACaaaGCGUCAUUGAUa -3'
miRNA:   3'- -GGAAUUGAGG----------AUUG---UGCAGUAACUAc -5'
28281 3' -43.3 NC_005902.1 + 161775 0.75 0.996583
Target:  5'- cCUUUAACaCCUAAgGUGUCAUUGAUGa -3'
miRNA:   3'- -GGAAUUGaGGAUUgUGCAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 104284 0.75 0.996583
Target:  5'- -gUUAACUCUUAAgGCaUCAUUGAUGa -3'
miRNA:   3'- ggAAUUGAGGAUUgUGcAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 20057 0.75 0.995961
Target:  5'- aUUUAACUCUUaaGACAUGUCAaUGAUGc -3'
miRNA:   3'- gGAAUUGAGGA--UUGUGCAGUaACUAC- -5'
28281 3' -43.3 NC_005902.1 + 20222 0.76 0.992481
Target:  5'- -gUUAACUCCUAAgGCaUCAUUGAUa -3'
miRNA:   3'- ggAAUUGAGGAUUgUGcAGUAACUAc -5'
28281 3' -43.3 NC_005902.1 + 95873 0.76 0.994174
Target:  5'- cCCUcUAACUCCUAaggcauuaucaacaACACuuuguGUCAUUGAUGa -3'
miRNA:   3'- -GGA-AUUGAGGAU--------------UGUG-----CAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 149385 0.76 0.995249
Target:  5'- -aUUAACUCCUAAaAUGUCAUcGAUGa -3'
miRNA:   3'- ggAAUUGAGGAUUgUGCAGUAaCUAC- -5'
28281 3' -43.3 NC_005902.1 + 137790 0.76 0.994438
Target:  5'- aCCUuuUAGCUCCUAugGCaUUAUUGAUa -3'
miRNA:   3'- -GGA--AUUGAGGAUugUGcAGUAACUAc -5'
28281 3' -43.3 NC_005902.1 + 20413 0.76 0.992481
Target:  5'- -gUUAACUCCUAAgGCaUCAUUGAUa -3'
miRNA:   3'- ggAAUUGAGGAUUgUGcAGUAACUAc -5'
28281 3' -43.3 NC_005902.1 + 71929 0.77 0.988562
Target:  5'- cCUUUAAUUCC--ACAuCGUCAUUGAUGa -3'
miRNA:   3'- -GGAAUUGAGGauUGU-GCAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 149853 0.77 0.991316
Target:  5'- uCCUUaAACUCCUAAaACaUCGUUGAUGa -3'
miRNA:   3'- -GGAA-UUGAGGAUUgUGcAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 130812 0.78 0.981067
Target:  5'- cCUUUAACUUCUAAgGCGUCAUcGAUa -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGCAGUAaCUAc -5'
28281 3' -43.3 NC_005902.1 + 100571 0.78 0.985173
Target:  5'- cCCUUuACUCUUAAgGCaUCAUUGAUGa -3'
miRNA:   3'- -GGAAuUGAGGAUUgUGcAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 58157 0.79 0.973391
Target:  5'- uCUUUAACUCUUAAgACGUUAUUGAc- -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGCAGUAACUac -5'
28281 3' -43.3 NC_005902.1 + 25070 0.79 0.970391
Target:  5'- cCUUUAACUCCUAAaGCGUUGUUGAc- -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGCAGUAACUac -5'
28281 3' -43.3 NC_005902.1 + 67424 0.8 0.959954
Target:  5'- uCUUUAACUCCUAagGCAUuGUUAUUGAUGc -3'
miRNA:   3'- -GGAAUUGAGGAU--UGUG-CAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 42149 0.8 0.947222
Target:  5'- -gUUAACUCCaAACAUGUCAUUGAc- -3'
miRNA:   3'- ggAAUUGAGGaUUGUGCAGUAACUac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.