Results 61 - 80 of 112 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28281 | 3' | -43.3 | NC_005902.1 | + | 15931 | 0.7 | 0.99998 |
Target: 5'- cCUUUAAUUCCUGggguaucauuaauaACACucuacauGUCGUUGAUGa -3' miRNA: 3'- -GGAAUUGAGGAU--------------UGUG-------CAGUAACUAC- -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 116760 | 0.7 | 0.999983 |
Target: 5'- cCCUUuACUCCUAAaACaUCAUUGAc- -3' miRNA: 3'- -GGAAuUGAGGAUUgUGcAGUAACUac -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 157919 | 0.7 | 0.999991 |
Target: 5'- cCUUUAACUCCaugugucaucgaUGAUGCuuuguGUCAUUGAUGa -3' miRNA: 3'- -GGAAUUGAGG------------AUUGUG-----CAGUAACUAC- -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 103936 | 0.7 | 0.999991 |
Target: 5'- cCUUUAAUUCUUAAaGCaUCAUUGAUGa -3' miRNA: 3'- -GGAAUUGAGGAUUgUGcAGUAACUAC- -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 166076 | 0.7 | 0.999991 |
Target: 5'- cCUUUAACUUCUAAgAUGUCAUUa--- -3' miRNA: 3'- -GGAAUUGAGGAUUgUGCAGUAAcuac -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 106321 | 0.7 | 0.999991 |
Target: 5'- uCUUUAACUCCUAAgGCaUCAUUaAUGc -3' miRNA: 3'- -GGAAUUGAGGAUUgUGcAGUAAcUAC- -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 146654 | 0.69 | 0.999994 |
Target: 5'- cCUUUAACUCUacauugucguuaaUAACAUGaagcaUCAUUGAUGa -3' miRNA: 3'- -GGAAUUGAGG-------------AUUGUGC-----AGUAACUAC- -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 37567 | 0.69 | 0.999994 |
Target: 5'- uUUUAACUCCUaaggcaucucgauGACGCcuuguGUUAUUGAUGa -3' miRNA: 3'- gGAAUUGAGGA-------------UUGUG-----CAGUAACUAC- -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 112529 | 0.69 | 0.999994 |
Target: 5'- cCUUUAACUCU--ACACuGUUAUUGAUa -3' miRNA: 3'- -GGAAUUGAGGauUGUG-CAGUAACUAc -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 156711 | 0.69 | 0.999996 |
Target: 5'- cCUUUAACUCUUAAgGCaUCAUcaaUGAUGu -3' miRNA: 3'- -GGAAUUGAGGAUUgUGcAGUA---ACUAC- -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 118965 | 0.69 | 0.999996 |
Target: 5'- aCCUuuUAACUCCUAAaGCaUUAUUGAUa -3' miRNA: 3'- -GGA--AUUGAGGAUUgUGcAGUAACUAc -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 76000 | 0.69 | 0.999999 |
Target: 5'- cCUUUAAUUCCacaugucauUAACAaugcguugUGUCAUUGAUGg -3' miRNA: 3'- -GGAAUUGAGG---------AUUGU--------GCAGUAACUAC- -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 33387 | 0.69 | 0.999996 |
Target: 5'- uCUUUAACUCCUAAaguauCGUCGaUGAc- -3' miRNA: 3'- -GGAAUUGAGGAUUgu---GCAGUaACUac -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 20302 | 0.69 | 0.999996 |
Target: 5'- ----uACUCCUAACucAUGUCAUcGAUGa -3' miRNA: 3'- ggaauUGAGGAUUG--UGCAGUAaCUAC- -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 163813 | 0.69 | 0.999996 |
Target: 5'- cUCUUAACUCCUAAagUGUCAUUa--- -3' miRNA: 3'- -GGAAUUGAGGAUUguGCAGUAAcuac -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 173180 | 0.69 | 0.999996 |
Target: 5'- cCCUUAACUCCUAaguuauauACACGUUu------ -3' miRNA: 3'- -GGAAUUGAGGAU--------UGUGCAGuaacuac -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 33259 | 0.69 | 0.999996 |
Target: 5'- uCUUUAACUCCUAAaguauCGUCGaUGAc- -3' miRNA: 3'- -GGAAUUGAGGAUUgu---GCAGUaACUac -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 8344 | 0.69 | 0.999994 |
Target: 5'- cUCUUAACUCCUAaaACAuUGUCGaUGAc- -3' miRNA: 3'- -GGAAUUGAGGAU--UGU-GCAGUaACUac -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 101974 | 0.69 | 0.999994 |
Target: 5'- ----uACUCCUAAauCGUCAUUGAUa -3' miRNA: 3'- ggaauUGAGGAUUguGCAGUAACUAc -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 110170 | 0.69 | 0.999998 |
Target: 5'- cCUUUAAUUCCUAaggcauugucagaauAUAaagUGUCAUUGAUGa -3' miRNA: 3'- -GGAAUUGAGGAU---------------UGU---GCAGUAACUAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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