miRNA display CGI


Results 81 - 100 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28281 3' -43.3 NC_005902.1 + 67821 0.68 0.999999
Target:  5'- aCCUuuUAACUCCUAaaGCAuUGUCAaUGAc- -3'
miRNA:   3'- -GGA--AUUGAGGAU--UGU-GCAGUaACUac -5'
28281 3' -43.3 NC_005902.1 + 139815 0.68 0.999999
Target:  5'- aCCUuuUAACUCCauguugucaaUGACGCcuugcaUCAUUGAUGa -3'
miRNA:   3'- -GGA--AUUGAGG----------AUUGUGc-----AGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 37320 0.68 1
Target:  5'- cCUUUAACUCCauguugucaucaaUAACacaagGCGUCAUcGAUGa -3'
miRNA:   3'- -GGAAUUGAGG-------------AUUG-----UGCAGUAaCUAC- -5'
28281 3' -43.3 NC_005902.1 + 81997 0.68 1
Target:  5'- cCUUUAAaUCCUAAgGUGUUAUUGGUGa -3'
miRNA:   3'- -GGAAUUgAGGAUUgUGCAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 174933 0.68 1
Target:  5'- -aUUAACUCCUAAaAUaUCAUUGAUa -3'
miRNA:   3'- ggAAUUGAGGAUUgUGcAGUAACUAc -5'
28281 3' -43.3 NC_005902.1 + 162331 0.68 1
Target:  5'- uUUUAAUUUUaAACACGUCAUuaaUGAUGu -3'
miRNA:   3'- gGAAUUGAGGaUUGUGCAGUA---ACUAC- -5'
28281 3' -43.3 NC_005902.1 + 3130 0.68 1
Target:  5'- -aUUAACUCCguAUACGUCAcUGAc- -3'
miRNA:   3'- ggAAUUGAGGauUGUGCAGUaACUac -5'
28281 3' -43.3 NC_005902.1 + 28879 0.68 0.999999
Target:  5'- -aUUAAUUCCUAgggcaucaGCACuGUCAgUGAUGa -3'
miRNA:   3'- ggAAUUGAGGAU--------UGUG-CAGUaACUAC- -5'
28281 3' -43.3 NC_005902.1 + 11426 0.68 0.999999
Target:  5'- uCCUUAACUCUUAAgGCaUCAUcaaUGAc- -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGcAGUA---ACUac -5'
28281 3' -43.3 NC_005902.1 + 144335 0.68 0.999999
Target:  5'- -aUUAACUCCUAAgGCaUCAaUGAUa -3'
miRNA:   3'- ggAAUUGAGGAUUgUGcAGUaACUAc -5'
28281 3' -43.3 NC_005902.1 + 17056 0.68 1
Target:  5'- aCCUuuUAACUCUaugu-UGUCAUUGAUGa -3'
miRNA:   3'- -GGA--AUUGAGGauuguGCAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 97110 0.68 1
Target:  5'- uUUUAACUCUgAACAUGUUGUcaaUGAUGu -3'
miRNA:   3'- gGAAUUGAGGaUUGUGCAGUA---ACUAC- -5'
28281 3' -43.3 NC_005902.1 + 99188 0.68 1
Target:  5'- cCCUUAACUUCUAagGCAuUGUUAaUGAUa -3'
miRNA:   3'- -GGAAUUGAGGAU--UGU-GCAGUaACUAc -5'
28281 3' -43.3 NC_005902.1 + 180753 0.67 1
Target:  5'- cCCUUAAUUCCUAagguguuaucaacaAUGCuucauaUCAUUGAUGa -3'
miRNA:   3'- -GGAAUUGAGGAU--------------UGUGc-----AGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 54680 0.67 1
Target:  5'- --aUAACUCCUAAUACagGUgAUUGGUu -3'
miRNA:   3'- ggaAUUGAGGAUUGUG--CAgUAACUAc -5'
28281 3' -43.3 NC_005902.1 + 140066 0.67 1
Target:  5'- -gUUAACcCCUAACucaugGCGUCAUcaaUGAUGc -3'
miRNA:   3'- ggAAUUGaGGAUUG-----UGCAGUA---ACUAC- -5'
28281 3' -43.3 NC_005902.1 + 114742 0.67 1
Target:  5'- cCCcUAACUCCcAAgGCaUCAUUGAUa -3'
miRNA:   3'- -GGaAUUGAGGaUUgUGcAGUAACUAc -5'
28281 3' -43.3 NC_005902.1 + 50416 0.67 1
Target:  5'- -gUUAAUUCCUAAgGCaUCAUcGAUGa -3'
miRNA:   3'- ggAAUUGAGGAUUgUGcAGUAaCUAC- -5'
28281 3' -43.3 NC_005902.1 + 75753 0.67 1
Target:  5'- cUCUUAACUCCUAaaGCACcaUCAaUGAc- -3'
miRNA:   3'- -GGAAUUGAGGAU--UGUGc-AGUaACUac -5'
28281 3' -43.3 NC_005902.1 + 82108 0.67 1
Target:  5'- aCCUuuUAACUCCaugu-UGUUAUUGAUGa -3'
miRNA:   3'- -GGA--AUUGAGGauuguGCAGUAACUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.