miRNA display CGI


Results 101 - 112 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28281 3' -43.3 NC_005902.1 + 82108 0.67 1
Target:  5'- aCCUuuUAACUCCaugu-UGUUAUUGAUGa -3'
miRNA:   3'- -GGA--AUUGAGGauuguGCAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 139875 0.67 1
Target:  5'- -gUUAACUCUUuaauguUAUGUCAUUGAUa -3'
miRNA:   3'- ggAAUUGAGGAuu----GUGCAGUAACUAc -5'
28281 3' -43.3 NC_005902.1 + 5314 0.66 1
Target:  5'- uUUUAACUUCUAAgGUGUCGUcaaUGAUGc -3'
miRNA:   3'- gGAAUUGAGGAUUgUGCAGUA---ACUAC- -5'
28281 3' -43.3 NC_005902.1 + 1315 0.66 1
Target:  5'- -aUUAAUUCCUAAgGUGUUGUUGAUa -3'
miRNA:   3'- ggAAUUGAGGAUUgUGCAGUAACUAc -5'
28281 3' -43.3 NC_005902.1 + 134275 0.66 1
Target:  5'- uCUUUAACUCCUAAgGCaUUAUuaacaaUGGUGu -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGcAGUA------ACUAC- -5'
28281 3' -43.3 NC_005902.1 + 93540 0.66 1
Target:  5'- cCCUUAACUUCacaucguuguuaaUGACAUaaagcaUCAUUGAUGa -3'
miRNA:   3'- -GGAAUUGAGG-------------AUUGUGc-----AGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 11368 0.66 1
Target:  5'- -gUUAAC-CCUAug-UGUCAUUGAUGa -3'
miRNA:   3'- ggAAUUGaGGAUuguGCAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 150153 0.66 1
Target:  5'- cCUUUAACaCCUAAgGUGUgGUUGAUGa -3'
miRNA:   3'- -GGAAUUGaGGAUUgUGCAgUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 114990 0.66 1
Target:  5'- cCUUUAACUCU--ACAuCGUCAccGAUGa -3'
miRNA:   3'- -GGAAUUGAGGauUGU-GCAGUaaCUAC- -5'
28281 3' -43.3 NC_005902.1 + 123082 0.66 1
Target:  5'- cCUUUAAUUCCUAaggcaucaucaACaaugcaaaACGUCAUUGAa- -3'
miRNA:   3'- -GGAAUUGAGGAU-----------UG--------UGCAGUAACUac -5'
28281 3' -43.3 NC_005902.1 + 134346 0.66 1
Target:  5'- --cUAAUUCCUAAgAUGUCAUcaacGAUGc -3'
miRNA:   3'- ggaAUUGAGGAUUgUGCAGUAa---CUAC- -5'
28281 3' -43.3 NC_005902.1 + 136731 0.66 1
Target:  5'- uCUUUAACUCCaugu-UGUCAUUGAc- -3'
miRNA:   3'- -GGAAUUGAGGauuguGCAGUAACUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.