miRNA display CGI


Results 81 - 100 of 112 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28281 3' -43.3 NC_005902.1 + 137790 0.76 0.994438
Target:  5'- aCCUuuUAGCUCCUAugGCaUUAUUGAUa -3'
miRNA:   3'- -GGA--AUUGAGGAUugUGcAGUAACUAc -5'
28281 3' -43.3 NC_005902.1 + 20413 0.76 0.992481
Target:  5'- -gUUAACUCCUAAgGCaUCAUUGAUa -3'
miRNA:   3'- ggAAUUGAGGAUUgUGcAGUAACUAc -5'
28281 3' -43.3 NC_005902.1 + 71929 0.77 0.988562
Target:  5'- cCUUUAAUUCC--ACAuCGUCAUUGAUGa -3'
miRNA:   3'- -GGAAUUGAGGauUGU-GCAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 100571 0.78 0.985173
Target:  5'- cCCUUuACUCUUAAgGCaUCAUUGAUGa -3'
miRNA:   3'- -GGAAuUGAGGAUUgUGcAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 67424 0.8 0.959954
Target:  5'- uCUUUAACUCCUAagGCAUuGUUAUUGAUGc -3'
miRNA:   3'- -GGAAUUGAGGAU--UGUG-CAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 143775 0.82 0.914442
Target:  5'- -gUUAACUCCUAAgAUGUCAUUGAc- -3'
miRNA:   3'- ggAAUUGAGGAUUgUGCAGUAACUac -5'
28281 3' -43.3 NC_005902.1 + 58849 0.84 0.847182
Target:  5'- uCUUUAACUCUUAAgACGUCAUUGAc- -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGCAGUAACUac -5'
28281 3' -43.3 NC_005902.1 + 48416 0.9 0.578261
Target:  5'- cCUUUAGCUCCUAAgGCGUCAUcGAUGa -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGCAGUAaCUAC- -5'
28281 3' -43.3 NC_005902.1 + 13052 0.75 0.997124
Target:  5'- cCUUUAACUCCacaucaucaaUGACaaaGCGUCAUUGAUa -3'
miRNA:   3'- -GGAAUUGAGG----------AUUG---UGCAGUAACUAc -5'
28281 3' -43.3 NC_005902.1 + 93718 0.75 0.997995
Target:  5'- cCCcUGACUCCUAAagUGUCAUUGAc- -3'
miRNA:   3'- -GGaAUUGAGGAUUguGCAGUAACUac -5'
28281 3' -43.3 NC_005902.1 + 137845 0.75 0.997592
Target:  5'- cCUUUAACUCCUAAaguaUCAUUGAUGu -3'
miRNA:   3'- -GGAAUUGAGGAUUgugcAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 167735 0.71 0.999921
Target:  5'- gCUUUAACUCCUAAgGCaUUAUuaaUGAUGa -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGcAGUA---ACUAC- -5'
28281 3' -43.3 NC_005902.1 + 67674 0.71 0.999921
Target:  5'- cCUUUAACUUCUAAgGCaUCAUUGAc- -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGcAGUAACUac -5'
28281 3' -43.3 NC_005902.1 + 67074 0.72 0.999895
Target:  5'- cCCccAACUCCaAACAUGUUAcUGAUGa -3'
miRNA:   3'- -GGaaUUGAGGaUUGUGCAGUaACUAC- -5'
28281 3' -43.3 NC_005902.1 + 8529 0.72 0.999895
Target:  5'- -aUUAAUUCCUAAaGCuUCAUUGAUGa -3'
miRNA:   3'- ggAAUUGAGGAUUgUGcAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 125951 0.72 0.999895
Target:  5'- uCUUUAACUUCUAAgGCaUUGUUGAUGa -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGcAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 99909 0.72 0.999705
Target:  5'- cCUUUAAUUCCUAAgGCGUCAUc---- -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGCAGUAacuac -5'
28281 3' -43.3 NC_005902.1 + 181205 0.72 0.999705
Target:  5'- cCUUUAACUCCUAAaGCGUUGUcaaUGAUa -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGCAGUA---ACUAc -5'
28281 3' -43.3 NC_005902.1 + 170136 0.74 0.998632
Target:  5'- cCUUUAACcCCaAACACGUCGUcGGUGa -3'
miRNA:   3'- -GGAAUUGaGGaUUGUGCAGUAaCUAC- -5'
28281 3' -43.3 NC_005902.1 + 58404 0.74 0.998339
Target:  5'- cCUUUAACUCU--ACGCaUCAUUGAUGa -3'
miRNA:   3'- -GGAAUUGAGGauUGUGcAGUAACUAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.