miRNA display CGI


Results 101 - 112 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28281 3' -43.3 NC_005902.1 + 27731 0.71 0.999921
Target:  5'- uCUUUAACUCCUAAgGCaUCAUcgccGAUGg -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGcAGUAa---CUAC- -5'
28281 3' -43.3 NC_005902.1 + 66957 0.71 0.999921
Target:  5'- aUUUAGCUCU--ACACaUCGUUGAUGa -3'
miRNA:   3'- gGAAUUGAGGauUGUGcAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 106000 0.71 0.999914
Target:  5'- uCUUUAACUCCUaaguuguucucaauGAUgcuuuAUGUCAUUGGUGa -3'
miRNA:   3'- -GGAAUUGAGGA--------------UUG-----UGCAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 15804 0.72 0.999895
Target:  5'- cCUUUAACUCCUAagGCAUuGUUAaUGAUGc -3'
miRNA:   3'- -GGAAUUGAGGAU--UGUG-CAGUaACUAC- -5'
28281 3' -43.3 NC_005902.1 + 169669 0.72 0.99977
Target:  5'- uUUUAACUCUUAAgGCGUCAUcaaUGAc- -3'
miRNA:   3'- gGAAUUGAGGAUUgUGCAGUA---ACUac -5'
28281 3' -43.3 NC_005902.1 + 162467 0.73 0.999626
Target:  5'- uUUUAAUUCCUAAgGUGUUGUUGAUGg -3'
miRNA:   3'- gGAAUUGAGGAUUgUGCAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 161949 0.73 0.999494
Target:  5'- aCUUUAACUCCUAaggcaucguuaauaACACauaguaUCAUUGAUGa -3'
miRNA:   3'- -GGAAUUGAGGAU--------------UGUGc-----AGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 49984 0.74 0.99903
Target:  5'- cCUUUAACUCCUAAggcauCAUcaauaaugcuuuguGUCAUUGAUGa -3'
miRNA:   3'- -GGAAUUGAGGAUU-----GUG--------------CAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 165782 0.74 0.998632
Target:  5'- --aUAACUCCUAAaACaUCAUUGAUGa -3'
miRNA:   3'- ggaAUUGAGGAUUgUGcAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 58603 0.74 0.998339
Target:  5'- cCUUUAACUCU--ACGCaUCAUUGAUGa -3'
miRNA:   3'- -GGAAUUGAGGauUGUGcAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 161775 0.75 0.996583
Target:  5'- cCUUUAACaCCUAAgGUGUCAUUGAUGa -3'
miRNA:   3'- -GGAAUUGaGGAUUgUGCAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 71681 1.13 0.040072
Target:  5'- uCCUUAACUCCUAACACGUCAUUGAUGa -3'
miRNA:   3'- -GGAAUUGAGGAUUGUGCAGUAACUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.