Results 1 - 20 of 112 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28281 | 3' | -43.3 | NC_005902.1 | + | 1315 | 0.66 | 1 |
Target: 5'- -aUUAAUUCCUAAgGUGUUGUUGAUa -3' miRNA: 3'- ggAAUUGAGGAUUgUGCAGUAACUAc -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 3130 | 0.68 | 1 |
Target: 5'- -aUUAACUCCguAUACGUCAcUGAc- -3' miRNA: 3'- ggAAUUGAGGauUGUGCAGUaACUac -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 5314 | 0.66 | 1 |
Target: 5'- uUUUAACUUCUAAgGUGUCGUcaaUGAUGc -3' miRNA: 3'- gGAAUUGAGGAUUgUGCAGUA---ACUAC- -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 8344 | 0.69 | 0.999994 |
Target: 5'- cUCUUAACUCCUAaaACAuUGUCGaUGAc- -3' miRNA: 3'- -GGAAUUGAGGAU--UGU-GCAGUaACUac -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 8529 | 0.72 | 0.999895 |
Target: 5'- -aUUAAUUCCUAAaGCuUCAUUGAUGa -3' miRNA: 3'- ggAAUUGAGGAUUgUGcAGUAACUAC- -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 11068 | 0.83 | 0.871881 |
Target: 5'- aUUUAACUCCUAAgGCaUCAUUGAUGa -3' miRNA: 3'- gGAAUUGAGGAUUgUGcAGUAACUAC- -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 11368 | 0.66 | 1 |
Target: 5'- -gUUAAC-CCUAug-UGUCAUUGAUGa -3' miRNA: 3'- ggAAUUGaGGAUuguGCAGUAACUAC- -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 11426 | 0.68 | 0.999999 |
Target: 5'- uCCUUAACUCUUAAgGCaUCAUcaaUGAc- -3' miRNA: 3'- -GGAAUUGAGGAUUgUGcAGUA---ACUac -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 13052 | 0.75 | 0.997124 |
Target: 5'- cCUUUAACUCCacaucaucaaUGACaaaGCGUCAUUGAUa -3' miRNA: 3'- -GGAAUUGAGG----------AUUG---UGCAGUAACUAc -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 15804 | 0.72 | 0.999895 |
Target: 5'- cCUUUAACUCCUAagGCAUuGUUAaUGAUGc -3' miRNA: 3'- -GGAAUUGAGGAU--UGUG-CAGUaACUAC- -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 15931 | 0.7 | 0.99998 |
Target: 5'- cCUUUAAUUCCUGggguaucauuaauaACACucuacauGUCGUUGAUGa -3' miRNA: 3'- -GGAAUUGAGGAU--------------UGUG-------CAGUAACUAC- -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 16806 | 0.86 | 0.751678 |
Target: 5'- cCUUUAACUCCUAAgGCaUCAUUGAUGa -3' miRNA: 3'- -GGAAUUGAGGAUUgUGcAGUAACUAC- -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 17056 | 0.68 | 1 |
Target: 5'- aCCUuuUAACUCUaugu-UGUCAUUGAUGa -3' miRNA: 3'- -GGA--AUUGAGGauuguGCAGUAACUAC- -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 20057 | 0.75 | 0.995961 |
Target: 5'- aUUUAACUCUUaaGACAUGUCAaUGAUGc -3' miRNA: 3'- gGAAUUGAGGA--UUGUGCAGUaACUAC- -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 20222 | 0.76 | 0.992481 |
Target: 5'- -gUUAACUCCUAAgGCaUCAUUGAUa -3' miRNA: 3'- ggAAUUGAGGAUUgUGcAGUAACUAc -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 20302 | 0.69 | 0.999996 |
Target: 5'- ----uACUCCUAACucAUGUCAUcGAUGa -3' miRNA: 3'- ggaauUGAGGAUUG--UGCAGUAaCUAC- -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 20413 | 0.76 | 0.992481 |
Target: 5'- -gUUAACUCCUAAgGCaUCAUUGAUa -3' miRNA: 3'- ggAAUUGAGGAUUgUGcAGUAACUAc -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 25070 | 0.79 | 0.970391 |
Target: 5'- cCUUUAACUCCUAAaGCGUUGUUGAc- -3' miRNA: 3'- -GGAAUUGAGGAUUgUGCAGUAACUac -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 26207 | 0.84 | 0.829576 |
Target: 5'- cCCUUAACUCCUAAgGCaUCAUUGAc- -3' miRNA: 3'- -GGAAUUGAGGAUUgUGcAGUAACUac -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 27731 | 0.71 | 0.999921 |
Target: 5'- uCUUUAACUCCUAAgGCaUCAUcgccGAUGg -3' miRNA: 3'- -GGAAUUGAGGAUUgUGcAGUAa---CUAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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