miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28281 3' -43.3 NC_005902.1 + 1315 0.66 1
Target:  5'- -aUUAAUUCCUAAgGUGUUGUUGAUa -3'
miRNA:   3'- ggAAUUGAGGAUUgUGCAGUAACUAc -5'
28281 3' -43.3 NC_005902.1 + 3130 0.68 1
Target:  5'- -aUUAACUCCguAUACGUCAcUGAc- -3'
miRNA:   3'- ggAAUUGAGGauUGUGCAGUaACUac -5'
28281 3' -43.3 NC_005902.1 + 5314 0.66 1
Target:  5'- uUUUAACUUCUAAgGUGUCGUcaaUGAUGc -3'
miRNA:   3'- gGAAUUGAGGAUUgUGCAGUA---ACUAC- -5'
28281 3' -43.3 NC_005902.1 + 8344 0.69 0.999994
Target:  5'- cUCUUAACUCCUAaaACAuUGUCGaUGAc- -3'
miRNA:   3'- -GGAAUUGAGGAU--UGU-GCAGUaACUac -5'
28281 3' -43.3 NC_005902.1 + 8529 0.72 0.999895
Target:  5'- -aUUAAUUCCUAAaGCuUCAUUGAUGa -3'
miRNA:   3'- ggAAUUGAGGAUUgUGcAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 11068 0.83 0.871881
Target:  5'- aUUUAACUCCUAAgGCaUCAUUGAUGa -3'
miRNA:   3'- gGAAUUGAGGAUUgUGcAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 11368 0.66 1
Target:  5'- -gUUAAC-CCUAug-UGUCAUUGAUGa -3'
miRNA:   3'- ggAAUUGaGGAUuguGCAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 11426 0.68 0.999999
Target:  5'- uCCUUAACUCUUAAgGCaUCAUcaaUGAc- -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGcAGUA---ACUac -5'
28281 3' -43.3 NC_005902.1 + 13052 0.75 0.997124
Target:  5'- cCUUUAACUCCacaucaucaaUGACaaaGCGUCAUUGAUa -3'
miRNA:   3'- -GGAAUUGAGG----------AUUG---UGCAGUAACUAc -5'
28281 3' -43.3 NC_005902.1 + 15804 0.72 0.999895
Target:  5'- cCUUUAACUCCUAagGCAUuGUUAaUGAUGc -3'
miRNA:   3'- -GGAAUUGAGGAU--UGUG-CAGUaACUAC- -5'
28281 3' -43.3 NC_005902.1 + 15931 0.7 0.99998
Target:  5'- cCUUUAAUUCCUGggguaucauuaauaACACucuacauGUCGUUGAUGa -3'
miRNA:   3'- -GGAAUUGAGGAU--------------UGUG-------CAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 16806 0.86 0.751678
Target:  5'- cCUUUAACUCCUAAgGCaUCAUUGAUGa -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGcAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 17056 0.68 1
Target:  5'- aCCUuuUAACUCUaugu-UGUCAUUGAUGa -3'
miRNA:   3'- -GGA--AUUGAGGauuguGCAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 20057 0.75 0.995961
Target:  5'- aUUUAACUCUUaaGACAUGUCAaUGAUGc -3'
miRNA:   3'- gGAAUUGAGGA--UUGUGCAGUaACUAC- -5'
28281 3' -43.3 NC_005902.1 + 20222 0.76 0.992481
Target:  5'- -gUUAACUCCUAAgGCaUCAUUGAUa -3'
miRNA:   3'- ggAAUUGAGGAUUgUGcAGUAACUAc -5'
28281 3' -43.3 NC_005902.1 + 20302 0.69 0.999996
Target:  5'- ----uACUCCUAACucAUGUCAUcGAUGa -3'
miRNA:   3'- ggaauUGAGGAUUG--UGCAGUAaCUAC- -5'
28281 3' -43.3 NC_005902.1 + 20413 0.76 0.992481
Target:  5'- -gUUAACUCCUAAgGCaUCAUUGAUa -3'
miRNA:   3'- ggAAUUGAGGAUUgUGcAGUAACUAc -5'
28281 3' -43.3 NC_005902.1 + 25070 0.79 0.970391
Target:  5'- cCUUUAACUCCUAAaGCGUUGUUGAc- -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGCAGUAACUac -5'
28281 3' -43.3 NC_005902.1 + 26207 0.84 0.829576
Target:  5'- cCCUUAACUCCUAAgGCaUCAUUGAc- -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGcAGUAACUac -5'
28281 3' -43.3 NC_005902.1 + 27731 0.71 0.999921
Target:  5'- uCUUUAACUCCUAAgGCaUCAUcgccGAUGg -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGcAGUAa---CUAC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.