miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28281 3' -43.3 NC_005902.1 + 71681 1.13 0.040072
Target:  5'- uCCUUAACUCCUAACACGUCAUUGAUGa -3'
miRNA:   3'- -GGAAUUGAGGAUUGUGCAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 161775 0.75 0.996583
Target:  5'- cCUUUAACaCCUAAgGUGUCAUUGAUGa -3'
miRNA:   3'- -GGAAUUGaGGAUUgUGCAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 165782 0.74 0.998632
Target:  5'- --aUAACUCCUAAaACaUCAUUGAUGa -3'
miRNA:   3'- ggaAUUGAGGAUUgUGcAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 136731 0.66 1
Target:  5'- uCUUUAACUCCaugu-UGUCAUUGAc- -3'
miRNA:   3'- -GGAAUUGAGGauuguGCAGUAACUac -5'
28281 3' -43.3 NC_005902.1 + 16806 0.86 0.751678
Target:  5'- cCUUUAACUCCUAAgGCaUCAUUGAUGa -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGcAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 26207 0.84 0.829576
Target:  5'- cCCUUAACUCCUAAgGCaUCAUUGAc- -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGcAGUAACUac -5'
28281 3' -43.3 NC_005902.1 + 42149 0.8 0.947222
Target:  5'- -gUUAACUCCaAACAUGUCAUUGAc- -3'
miRNA:   3'- ggAAUUGAGGaUUGUGCAGUAACUac -5'
28281 3' -43.3 NC_005902.1 + 39159 0.8 0.959954
Target:  5'- cCCUUAACUCCUAAaaaGUUGUUGAUa -3'
miRNA:   3'- -GGAAUUGAGGAUUgugCAGUAACUAc -5'
28281 3' -43.3 NC_005902.1 + 130812 0.78 0.981067
Target:  5'- cCUUUAACUUCUAAgGCGUCAUcGAUa -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGCAGUAaCUAc -5'
28281 3' -43.3 NC_005902.1 + 104284 0.75 0.996583
Target:  5'- -gUUAACUCUUAAgGCaUCAUUGAUGa -3'
miRNA:   3'- ggAAUUGAGGAUUgUGcAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 20222 0.76 0.992481
Target:  5'- -gUUAACUCCUAAgGCaUCAUUGAUa -3'
miRNA:   3'- ggAAUUGAGGAUUgUGcAGUAACUAc -5'
28281 3' -43.3 NC_005902.1 + 58157 0.79 0.973391
Target:  5'- uCUUUAACUCUUAAgACGUUAUUGAc- -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGCAGUAACUac -5'
28281 3' -43.3 NC_005902.1 + 81857 0.94 0.405083
Target:  5'- uCUUUAACUCCUAAgGCGUUAUUGAUGa -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGCAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 95873 0.76 0.994174
Target:  5'- cCCUcUAACUCCUAaggcauuaucaacaACACuuuguGUCAUUGAUGa -3'
miRNA:   3'- -GGA-AUUGAGGAU--------------UGUG-----CAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 169074 0.89 0.622073
Target:  5'- uUCUUGAUUCUUAAgGCGUCGUUGAUGa -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGCAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 25070 0.79 0.970391
Target:  5'- cCUUUAACUCCUAAaGCGUUGUUGAc- -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGCAGUAACUac -5'
28281 3' -43.3 NC_005902.1 + 20057 0.75 0.995961
Target:  5'- aUUUAACUCUUaaGACAUGUCAaUGAUGc -3'
miRNA:   3'- gGAAUUGAGGA--UUGUGCAGUaACUAC- -5'
28281 3' -43.3 NC_005902.1 + 58603 0.74 0.998339
Target:  5'- cCUUUAACUCU--ACGCaUCAUUGAUGa -3'
miRNA:   3'- -GGAAUUGAGGauUGUGcAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 91069 0.87 0.698683
Target:  5'- cCCUUAACUCCUAAgGCaUUAUUGAUGa -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGcAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 11068 0.83 0.871881
Target:  5'- aUUUAACUCCUAAgGCaUCAUUGAUGa -3'
miRNA:   3'- gGAAUUGAGGAUUgUGcAGUAACUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.