miRNA: 3'- -UAGUAGUUACUGCuaca-CCUUAAUUU- -5'
miRNA: 3'- -UAGUAGUUACUGcUACACCUUAauuu -5'
miRNA: 3'- -UAGUAGUUACUGCUACACcUUAAUUU- -5'
Results 61 - 63 of 63 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 28281 | 5' | -42.4 | NC_005902.1 | + | 167339 | 0.66 | 1 |
|
Target: 5'- uAUUAUCAAUGAUGcuuuaGGAAUUAAAg -3' miRNA: 3'- -UAGUAGUUACUGCuaca-CCUUAAUUU- -5' |
|||||||
| 28281 | 5' | -42.4 | NC_005902.1 | + | 169090 | 0.76 | 0.994613 |
|
Target: 5'- cGUCGUUGAUGACaGUGUGGAGUa--- -3' miRNA: 3'- -UAGUAGUUACUGcUACACCUUAauuu -5' |
|||||||
| 28281 | 5' | -42.4 | NC_005902.1 | + | 184481 | 0.78 | 0.980783 |
|
Target: 5'- cAUCAUUGAUGAUGAUGUGaAGUUAAAg -3' miRNA: 3'- -UAGUAGUUACUGCUACACcUUAAUUU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home