miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28281 5' -42.4 NC_005902.1 + 3343 0.68 1
Target:  5'- cAUUGUCAGUGACGuauacGGAGUUAAu -3'
miRNA:   3'- -UAGUAGUUACUGCuaca-CCUUAAUUu -5'
28281 5' -42.4 NC_005902.1 + 11282 0.71 0.999955
Target:  5'- uAUCAUCAAUGAUGccuuaGGAGUUAAAu -3'
miRNA:   3'- -UAGUAGUUACUGCuaca-CCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 11410 0.7 0.999979
Target:  5'- cAUCAUCAAUGACauaaagcaucaacaAUGUGGAuUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGc-------------UACACCUuAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 12840 0.84 0.828825
Target:  5'- uUUGUCAuUGAUGAUGUGGAGUUAAAg -3'
miRNA:   3'- uAGUAGUuACUGCUACACCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 15968 0.8 0.954221
Target:  5'- --uGUCGuUGAUGAUGUGGAGUUAAAg -3'
miRNA:   3'- uagUAGUuACUGCUACACCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 17020 0.72 0.999812
Target:  5'- uGUCAUCAAUGAUGccuuaGGAGUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGCuaca-CCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 26222 0.67 1
Target:  5'- -gCAUCAuUGACGAUGguguaGAGUUAAu -3'
miRNA:   3'- uaGUAGUuACUGCUACac---CUUAAUUu -5'
28281 5' -42.4 NC_005902.1 + 26422 0.7 0.999988
Target:  5'- cAUCGUCAAUGAUGccuuaGGAGUUAAGg -3'
miRNA:   3'- -UAGUAGUUACUGCuaca-CCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 26538 0.66 1
Target:  5'- -gCGUCAuUGAUGAUGccuuaGGAGUUAAu -3'
miRNA:   3'- uaGUAGUuACUGCUACa----CCUUAAUUu -5'
28281 5' -42.4 NC_005902.1 + 29064 0.68 0.999999
Target:  5'- cAUCAUCAGcaACaAUGUGGAGUUAAu -3'
miRNA:   3'- -UAGUAGUUacUGcUACACCUUAAUUu -5'
28281 5' -42.4 NC_005902.1 + 29541 0.68 0.999999
Target:  5'- uGUCAUCAAUGAUGcuuUGUGucAUUAAc -3'
miRNA:   3'- -UAGUAGUUACUGCu--ACACcuUAAUUu -5'
28281 5' -42.4 NC_005902.1 + 29739 0.75 0.997756
Target:  5'- cAUCAUUGAUGACaccGUGGAAUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGcuaCACCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 37354 0.72 0.999891
Target:  5'- cGUCAUCGAUGAUGccuuaGGAGUUAAAa -3'
miRNA:   3'- -UAGUAGUUACUGCuaca-CCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 42362 0.69 0.999999
Target:  5'- uAUUGUCAAUGAC-AUGUuuGGAGUUAAc -3'
miRNA:   3'- -UAGUAGUUACUGcUACA--CCUUAAUUu -5'
28281 5' -42.4 NC_005902.1 + 45044 0.68 1
Target:  5'- uGUCAUUGAUaAUG-UGUGGAGUUAAAg -3'
miRNA:   3'- -UAGUAGUUAcUGCuACACCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 48201 0.66 1
Target:  5'- uAUCAUCGAUGACGccuuaGGAGcUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGCuaca-CCUUaAUUU- -5'
28281 5' -42.4 NC_005902.1 + 50019 0.7 0.999976
Target:  5'- uGUCAUUGAUGAU-AUGUGGAAUUu-- -3'
miRNA:   3'- -UAGUAGUUACUGcUACACCUUAAuuu -5'
28281 5' -42.4 NC_005902.1 + 50218 0.67 1
Target:  5'- uAUCAUCAAUGACacaaagcauuauuGAUGaugccuuaGGAGUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUG-------------CUACa-------CCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 50384 0.67 1
Target:  5'- uAUCAUCAAUGAU-AUGUGaAGUUAAc -3'
miRNA:   3'- -UAGUAGUUACUGcUACACcUUAAUUu -5'
28281 5' -42.4 NC_005902.1 + 50430 0.69 0.999999
Target:  5'- cAUCAUCGAUGACauauuUGGAGUUAu- -3'
miRNA:   3'- -UAGUAGUUACUGcuac-ACCUUAAUuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.