miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28281 5' -42.4 NC_005902.1 + 71716 1.06 0.09976
Target:  5'- cAUCAUCAAUGACGAUGUGGAAUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGCUACACCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 29064 0.68 0.999999
Target:  5'- cAUCAUCAGcaACaAUGUGGAGUUAAu -3'
miRNA:   3'- -UAGUAGUUacUGcUACACCUUAAUUu -5'
28281 5' -42.4 NC_005902.1 + 149870 0.68 1
Target:  5'- cAUCGUUGAUGACaAUGUaGAGUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGcUACAcCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 48201 0.66 1
Target:  5'- uAUCAUCGAUGACGccuuaGGAGcUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGCuaca-CCUUaAUUU- -5'
28281 5' -42.4 NC_005902.1 + 54905 0.81 0.939798
Target:  5'- cAUCAUCAAUGACaAUGcGGAAUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGcUACaCCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 15968 0.8 0.954221
Target:  5'- --uGUCGuUGAUGAUGUGGAGUUAAAg -3'
miRNA:   3'- uagUAGUuACUGCUACACCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 184481 0.78 0.980783
Target:  5'- cAUCAUUGAUGAUGAUGUGaAGUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGCUACACcUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 75788 0.78 0.985076
Target:  5'- cAUUGUUAAUGAC-AUGUGGAAUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGcUACACCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 37354 0.72 0.999891
Target:  5'- cGUCAUCGAUGAUGccuuaGGAGUUAAAa -3'
miRNA:   3'- -UAGUAGUUACUGCuaca-CCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 50430 0.69 0.999999
Target:  5'- cAUCAUCGAUGACauauuUGGAGUUAu- -3'
miRNA:   3'- -UAGUAGUUACUGcuac-ACCUUAAUuu -5'
28281 5' -42.4 NC_005902.1 + 95909 0.7 0.999994
Target:  5'- uGUCAUUGAUGACGAUauaGAAUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGCUAcacCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 169090 0.76 0.994613
Target:  5'- cGUCGUUGAUGACaGUGUGGAGUa--- -3'
miRNA:   3'- -UAGUAGUUACUGcUACACCUUAauuu -5'
28281 5' -42.4 NC_005902.1 + 90507 1.05 0.108934
Target:  5'- cAUCAUCGAUGACGAUGUGGAGUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGCUACACCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 66970 0.7 0.999994
Target:  5'- cAUCGUUGAUGAUG-UGUGGAGcUAAu -3'
miRNA:   3'- -UAGUAGUUACUGCuACACCUUaAUUu -5'
28281 5' -42.4 NC_005902.1 + 114776 0.89 0.613061
Target:  5'- uGUCAUCGGUGACGAUGUaGAGUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGCUACAcCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 91085 0.77 0.990094
Target:  5'- cAUUAUUGAUGAUG-UGUGGAGUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGCuACACCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 154673 0.7 0.999995
Target:  5'- cAUUAUCAAcaauacuucuguuauUGAUGAUGUuuGGAGUUAAAg -3'
miRNA:   3'- -UAGUAGUU---------------ACUGCUACA--CCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 29541 0.68 0.999999
Target:  5'- uGUCAUCAAUGAUGcuuUGUGucAUUAAc -3'
miRNA:   3'- -UAGUAGUUACUGCu--ACACcuUAAUUu -5'
28281 5' -42.4 NC_005902.1 + 12840 0.84 0.828825
Target:  5'- uUUGUCAuUGAUGAUGUGGAGUUAAAg -3'
miRNA:   3'- uAGUAGUuACUGCUACACCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 104298 0.79 0.969201
Target:  5'- cAUCAUUGAUGACGGUGUgagguggGGggUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGCUACA-------CCuuAAUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.