Results 61 - 63 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28281 | 5' | -42.4 | NC_005902.1 | + | 142317 | 0.9 | 0.567753 |
Target: 5'- cAUCAUCGAUGACaAUGUGGGAUUAAAg -3' miRNA: 3'- -UAGUAGUUACUGcUACACCUUAAUUU- -5' |
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28281 | 5' | -42.4 | NC_005902.1 | + | 90507 | 1.05 | 0.108934 |
Target: 5'- cAUCAUCGAUGACGAUGUGGAGUUAAAg -3' miRNA: 3'- -UAGUAGUUACUGCUACACCUUAAUUU- -5' |
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28281 | 5' | -42.4 | NC_005902.1 | + | 71716 | 1.06 | 0.09976 |
Target: 5'- cAUCAUCAAUGACGAUGUGGAAUUAAAg -3' miRNA: 3'- -UAGUAGUUACUGCUACACCUUAAUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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