Results 1 - 9 of 9 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 28283 | 3' | -43.5 | NC_005902.1 | + | 155130 | 0.68 | 1 |
|
Target: 5'- ----uUGAAUGAAGUCUAUGaUGAUCu -3' miRNA: 3'- gcccuAUUUACUUCAGAUAUcACUGG- -5' |
|||||||
| 28283 | 3' | -43.5 | NC_005902.1 | + | 95667 | 0.66 | 1 |
|
Target: 5'- -----cGAAUGAAGUCUAUAGcaACCa -3' miRNA: 3'- gcccuaUUUACUUCAGAUAUCacUGG- -5' |
|||||||
| 28283 | 3' | -43.5 | NC_005902.1 | + | 106580 | 0.72 | 0.999742 |
|
Target: 5'- -----cAAAUGAAGUCUAUAGUGAa- -3' miRNA: 3'- gcccuaUUUACUUCAGAUAUCACUgg -5' |
|||||||
| 28283 | 3' | -43.5 | NC_005902.1 | + | 127553 | 0.73 | 0.999477 |
|
Target: 5'- ---aAUAAAUGAAGUUUAU-GUGACCa -3' miRNA: 3'- gcccUAUUUACUUCAGAUAuCACUGG- -5' |
|||||||
| 28283 | 3' | -43.5 | NC_005902.1 | + | 147678 | 0.74 | 0.998778 |
|
Target: 5'- ---aAUAAAUGAAGUCUAU-GUGACUa -3' miRNA: 3'- gcccUAUUUACUUCAGAUAuCACUGG- -5' |
|||||||
| 28283 | 3' | -43.5 | NC_005902.1 | + | 85210 | 0.76 | 0.99203 |
|
Target: 5'- ---------aGAAGUCUAUGGUGACCa -3' miRNA: 3'- gcccuauuuaCUUCAGAUAUCACUGG- -5' |
|||||||
| 28283 | 3' | -43.5 | NC_005902.1 | + | 74688 | 0.82 | 0.905854 |
|
Target: 5'- uGGGuaagaaAUGGAUGAAGUCUAUA-UGACCa -3' miRNA: 3'- gCCC------UAUUUACUUCAGAUAUcACUGG- -5' |
|||||||
| 28283 | 3' | -43.5 | NC_005902.1 | + | 105069 | 0.86 | 0.759145 |
|
Target: 5'- --aGAUAAAUGAAGUCUAU-GUGACCa -3' miRNA: 3'- gccCUAUUUACUUCAGAUAuCACUGG- -5' |
|||||||
| 28283 | 3' | -43.5 | NC_005902.1 | + | 79429 | 1.16 | 0.027451 |
|
Target: 5'- uCGGGAUAAAUGAAGUCUAUAGUGACCa -3' miRNA: 3'- -GCCCUAUUUACUUCAGAUAUCACUGG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home