miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28283 5' -38.2 NC_005902.1 + 182513 0.66 1
Target:  5'- uUGAUUC-CUAUAGACUUCu------- -3'
miRNA:   3'- -AUUAAGuGAUAUCUGAAGuaaacaaa -5'
28283 5' -38.2 NC_005902.1 + 131788 0.67 1
Target:  5'- ----gUugUGUAGACUUCAUaUGUc- -3'
miRNA:   3'- auuaaGugAUAUCUGAAGUAaACAaa -5'
28283 5' -38.2 NC_005902.1 + 23920 0.68 1
Target:  5'- aAGUUCauaaugACUAUAGACUUUAUucaUUGUa- -3'
miRNA:   3'- aUUAAG------UGAUAUCUGAAGUA---AACAaa -5'
28283 5' -38.2 NC_005902.1 + 77057 0.68 1
Target:  5'- ---gUCGUUAUAGACUUCAUUcaaUGUa- -3'
miRNA:   3'- auuaAGUGAUAUCUGAAGUAA---ACAaa -5'
28283 5' -38.2 NC_005902.1 + 38368 0.69 1
Target:  5'- ---gUCAC-AUAGACUUCAUUUa--- -3'
miRNA:   3'- auuaAGUGaUAUCUGAAGUAAAcaaa -5'
28283 5' -38.2 NC_005902.1 + 80975 0.69 1
Target:  5'- ---gUCAC-AUAGACUUCAUUUa--- -3'
miRNA:   3'- auuaAGUGaUAUCUGAAGUAAAcaaa -5'
28283 5' -38.2 NC_005902.1 + 90380 0.74 0.999999
Target:  5'- ---gUUGCUAUAGACUUCAUUcgaUGUa- -3'
miRNA:   3'- auuaAGUGAUAUCUGAAGUAA---ACAaa -5'
28283 5' -38.2 NC_005902.1 + 106612 0.82 0.995619
Target:  5'- ---gUCACUAUAGACUUCAUUUa--- -3'
miRNA:   3'- auuaAGUGAUAUCUGAAGUAAAcaaa -5'
28283 5' -38.2 NC_005902.1 + 79463 1.05 0.28891
Target:  5'- uUAAUUCACUAUAGACUUCAUUUGUUUu -3'
miRNA:   3'- -AUUAAGUGAUAUCUGAAGUAAACAAA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.