Results 41 - 60 of 474 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28284 | 3' | -38.2 | NC_005902.1 | + | 169732 | 0.67 | 1 |
Target: 5'- --gUAACACCUGAGauaUAUAgcuCAggUg -3' miRNA: 3'- gaaAUUGUGGAUUCg--AUAUau-GUuuG- -5' |
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28284 | 3' | -38.2 | NC_005902.1 | + | 115398 | 0.67 | 1 |
Target: 5'- -aUUAACGCgUAAGCauauUGUGCAGc- -3' miRNA: 3'- gaAAUUGUGgAUUCGau--AUAUGUUug -5' |
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28284 | 3' | -38.2 | NC_005902.1 | + | 8073 | 0.66 | 1 |
Target: 5'- uUUUAACACCUGAuaUA-AUACcuGCa -3' miRNA: 3'- gAAAUUGUGGAUUcgAUaUAUGuuUG- -5' |
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28284 | 3' | -38.2 | NC_005902.1 | + | 3256 | 0.66 | 1 |
Target: 5'- uUUUAACAUCUAAaCUA--UACAAAUg -3' miRNA: 3'- gAAAUUGUGGAUUcGAUauAUGUUUG- -5' |
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28284 | 3' | -38.2 | NC_005902.1 | + | 58534 | 0.66 | 1 |
Target: 5'- --aUAACGCCUuggGAGUUAaacUGUACuuACu -3' miRNA: 3'- gaaAUUGUGGA---UUCGAU---AUAUGuuUG- -5' |
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28284 | 3' | -38.2 | NC_005902.1 | + | 63728 | 0.69 | 1 |
Target: 5'- gUUUAACcUCUAGGUUAUAUACccACu -3' miRNA: 3'- gAAAUUGuGGAUUCGAUAUAUGuuUG- -5' |
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28284 | 3' | -38.2 | NC_005902.1 | + | 48631 | 0.69 | 1 |
Target: 5'- uUUUAACccuuuACCUAAG-UAUAUACAAAa -3' miRNA: 3'- gAAAUUG-----UGGAUUCgAUAUAUGUUUg -5' |
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28284 | 3' | -38.2 | NC_005902.1 | + | 137682 | 0.71 | 1 |
Target: 5'- -gUUAAUACCUAAaCUAUAcACAAAUa -3' miRNA: 3'- gaAAUUGUGGAUUcGAUAUaUGUUUG- -5' |
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28284 | 3' | -38.2 | NC_005902.1 | + | 153894 | 0.71 | 1 |
Target: 5'- -gUUAACAUCUAAaCUAUAUACucACu -3' miRNA: 3'- gaAAUUGUGGAUUcGAUAUAUGuuUG- -5' |
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28284 | 3' | -38.2 | NC_005902.1 | + | 150047 | 0.71 | 1 |
Target: 5'- gUUUAAgGaUUAAGCUAUAUAUGAACa -3' miRNA: 3'- gAAAUUgUgGAUUCGAUAUAUGUUUG- -5' |
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28284 | 3' | -38.2 | NC_005902.1 | + | 142181 | 0.71 | 1 |
Target: 5'- -gUUAACAU--AAGUUAUAUAUAAGCa -3' miRNA: 3'- gaAAUUGUGgaUUCGAUAUAUGUUUG- -5' |
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28284 | 3' | -38.2 | NC_005902.1 | + | 51067 | 0.71 | 1 |
Target: 5'- cCUUU-ACAU--AAGCUAUAUAUAAGCa -3' miRNA: 3'- -GAAAuUGUGgaUUCGAUAUAUGUUUG- -5' |
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28284 | 3' | -38.2 | NC_005902.1 | + | 118661 | 0.71 | 1 |
Target: 5'- -gUUAACAUCUAAGCUcauuUAUAUAGc- -3' miRNA: 3'- gaAAUUGUGGAUUCGAu---AUAUGUUug -5' |
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28284 | 3' | -38.2 | NC_005902.1 | + | 78330 | 0.7 | 1 |
Target: 5'- cCUUUAuaaACuCUAAGCUAUAUACuuAUu -3' miRNA: 3'- -GAAAUug-UG-GAUUCGAUAUAUGuuUG- -5' |
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28284 | 3' | -38.2 | NC_005902.1 | + | 138027 | 0.7 | 1 |
Target: 5'- cCUUUAACuCUUAAGCUAcAUAUuuGCu -3' miRNA: 3'- -GAAAUUGuGGAUUCGAUaUAUGuuUG- -5' |
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28284 | 3' | -38.2 | NC_005902.1 | + | 54287 | 0.7 | 1 |
Target: 5'- -gUUAACACCUAAaCUAUAUAUc--- -3' miRNA: 3'- gaAAUUGUGGAUUcGAUAUAUGuuug -5' |
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28284 | 3' | -38.2 | NC_005902.1 | + | 127443 | 0.69 | 1 |
Target: 5'- uUUUAACauuuuaaACUUAAGCUAUAaGCAAAg -3' miRNA: 3'- gAAAUUG-------UGGAUUCGAUAUaUGUUUg -5' |
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28284 | 3' | -38.2 | NC_005902.1 | + | 105139 | 0.69 | 1 |
Target: 5'- -cUUAACcCUUAAGUUAUAUACucACu -3' miRNA: 3'- gaAAUUGuGGAUUCGAUAUAUGuuUG- -5' |
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28284 | 3' | -38.2 | NC_005902.1 | + | 101811 | 0.69 | 1 |
Target: 5'- ---aAAC-CCgaugguccAGCUAUAUGCAAACa -3' miRNA: 3'- gaaaUUGuGGau------UCGAUAUAUGUUUG- -5' |
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28284 | 3' | -38.2 | NC_005902.1 | + | 155217 | 0.69 | 1 |
Target: 5'- uUUUAAUACCUAAaucAUAUAUAAACa -3' miRNA: 3'- gAAAUUGUGGAUUcgaUAUAUGUUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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