miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28285 3' -44.5 NC_005902.1 + 81094 1.13 0.026338
Target:  5'- aCAUCCUUUAAACCCUGGCGAUUAUACa -3'
miRNA:   3'- -GUAGGAAAUUUGGGACCGCUAAUAUG- -5'
28285 3' -44.5 NC_005902.1 + 81352 0.66 0.999999
Target:  5'- uUAUCCUUUAAAUCCUaagGGUUGUAUu -3'
miRNA:   3'- -GUAGGAAAUUUGGGAccgCUAAUAUG- -5'
28285 3' -44.5 NC_005902.1 + 81993 0.66 0.999999
Target:  5'- uUAUCCUUUAAAUCCUaaGGUG-UUAUu- -3'
miRNA:   3'- -GUAGGAAAUUUGGGA--CCGCuAAUAug -5'
28285 3' -44.5 NC_005902.1 + 90794 0.66 0.999999
Target:  5'- --cCCUUUAAAUCCUaaGGC--UUAUACa -3'
miRNA:   3'- guaGGAAAUUUGGGA--CCGcuAAUAUG- -5'
28285 3' -44.5 NC_005902.1 + 100274 0.72 0.997939
Target:  5'- uUAUCCUUUAAAUCCUaaGGC--UUAUACu -3'
miRNA:   3'- -GUAGGAAAUUUGGGA--CCGcuAAUAUG- -5'
28285 3' -44.5 NC_005902.1 + 139740 0.72 0.997939
Target:  5'- uUAUCCUUUAAAUCCUaaGGC--UUAUACu -3'
miRNA:   3'- -GUAGGAAAUUUGGGA--CCGcuAAUAUG- -5'
28285 3' -44.5 NC_005902.1 + 163699 0.69 0.999939
Target:  5'- aAUCCUUUAAAUCCUaaGGC---UAUACu -3'
miRNA:   3'- gUAGGAAAUUUGGGA--CCGcuaAUAUG- -5'
28285 3' -44.5 NC_005902.1 + 168357 0.77 0.95477
Target:  5'- uCAUCCUUUAAACCCUaaGGC--UUAUAUa -3'
miRNA:   3'- -GUAGGAAAUUUGGGA--CCGcuAAUAUG- -5'
28285 3' -44.5 NC_005902.1 + 168611 0.71 0.999517
Target:  5'- --cCCUUUAAACCCUaaGGC--UUAUACu -3'
miRNA:   3'- guaGGAAAUUUGGGA--CCGcuAAUAUG- -5'
28285 3' -44.5 NC_005902.1 + 184514 0.72 0.997939
Target:  5'- gUAUCCUUUAAAUCCUaaGGC--UUAUACu -3'
miRNA:   3'- -GUAGGAAAUUUGGGA--CCGcuAAUAUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.