Results 1 - 20 of 88 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28285 | 5' | -41.3 | NC_005902.1 | + | 72027 | 0.66 | 1 |
Target: 5'- aGAAUugAACCUUUcAGGuUUUAAAGa- -3' miRNA: 3'- -CUUAugUUGGGAA-UCCuAAAUUUCcu -5' |
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28285 | 5' | -41.3 | NC_005902.1 | + | 51401 | 0.66 | 1 |
Target: 5'- ---aACAACacaUUAGGAaUUAAAGGGu -3' miRNA: 3'- cuuaUGUUGgg-AAUCCUaAAUUUCCU- -5' |
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28285 | 5' | -41.3 | NC_005902.1 | + | 139773 | 0.66 | 1 |
Target: 5'- -uAUAUAAgCCUUAGGGUUUAAc--- -3' miRNA: 3'- cuUAUGUUgGGAAUCCUAAAUUuccu -5' |
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28285 | 5' | -41.3 | NC_005902.1 | + | 91274 | 0.66 | 1 |
Target: 5'- -----aAugCCUUAGGAgUUAAGGGu -3' miRNA: 3'- cuuaugUugGGAAUCCUaAAUUUCCu -5' |
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28285 | 5' | -41.3 | NC_005902.1 | + | 61637 | 0.66 | 1 |
Target: 5'- uGAAUAUAGCaaauaUUAGGAUUUAAAaGAu -3' miRNA: 3'- -CUUAUGUUGgg---AAUCCUAAAUUUcCU- -5' |
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28285 | 5' | -41.3 | NC_005902.1 | + | 50578 | 0.66 | 1 |
Target: 5'- uGAGUGaa--UgUUAGGAUUUAAAGGGu -3' miRNA: 3'- -CUUAUguugGgAAUCCUAAAUUUCCU- -5' |
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28285 | 5' | -41.3 | NC_005902.1 | + | 15072 | 0.66 | 1 |
Target: 5'- uGAGUAUAAaUUUUAGGGUUUAAAGa- -3' miRNA: 3'- -CUUAUGUUgGGAAUCCUAAAUUUCcu -5' |
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28285 | 5' | -41.3 | NC_005902.1 | + | 67030 | 0.67 | 1 |
Target: 5'- uGAGUAUAuagCUUAGGAgUUAAAGGGu -3' miRNA: 3'- -CUUAUGUuggGAAUCCUaAAUUUCCU- -5' |
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28285 | 5' | -41.3 | NC_005902.1 | + | 106099 | 0.67 | 1 |
Target: 5'- cGAUGCuuugcauuaaugAugCCUUAGGAguuaaagagUUAAAGGAu -3' miRNA: 3'- cUUAUG------------UugGGAAUCCUa--------AAUUUCCU- -5' |
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28285 | 5' | -41.3 | NC_005902.1 | + | 88990 | 0.67 | 1 |
Target: 5'- aAGUAUAugCUUUAGGAgUUAAAGa- -3' miRNA: 3'- cUUAUGUugGGAAUCCUaAAUUUCcu -5' |
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28285 | 5' | -41.3 | NC_005902.1 | + | 148352 | 0.67 | 1 |
Target: 5'- --uUACAG-CUUUAGGAUUUAGAGa- -3' miRNA: 3'- cuuAUGUUgGGAAUCCUAAAUUUCcu -5' |
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28285 | 5' | -41.3 | NC_005902.1 | + | 136258 | 0.67 | 1 |
Target: 5'- uGAGUAUAuagCUUAGGAgUUAAAGGGu -3' miRNA: 3'- -CUUAUGUuggGAAUCCUaAAUUUCCU- -5' |
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28285 | 5' | -41.3 | NC_005902.1 | + | 87215 | 0.67 | 1 |
Target: 5'- ---aAUGAUaCCUUAGGGaUUAAAGGAu -3' miRNA: 3'- cuuaUGUUG-GGAAUCCUaAAUUUCCU- -5' |
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28285 | 5' | -41.3 | NC_005902.1 | + | 176149 | 0.67 | 1 |
Target: 5'- uGAUGaua-CCUUAGGAgUUAAAGGGu -3' miRNA: 3'- cUUAUguugGGAAUCCUaAAUUUCCU- -5' |
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28285 | 5' | -41.3 | NC_005902.1 | + | 74871 | 0.67 | 1 |
Target: 5'- ---aACAACgCaUUAGGAgUUAAAGGGu -3' miRNA: 3'- cuuaUGUUGgG-AAUCCUaAAUUUCCU- -5' |
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28285 | 5' | -41.3 | NC_005902.1 | + | 170338 | 0.67 | 1 |
Target: 5'- ---cACAcuACCCUUGGGAaauccccaUUUAuuGGAa -3' miRNA: 3'- cuuaUGU--UGGGAAUCCU--------AAAUuuCCU- -5' |
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28285 | 5' | -41.3 | NC_005902.1 | + | 147214 | 0.68 | 1 |
Target: 5'- ---aAC-ACCUUUGGGAUUUuguaauuGAGGAa -3' miRNA: 3'- cuuaUGuUGGGAAUCCUAAAu------UUCCU- -5' |
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28285 | 5' | -41.3 | NC_005902.1 | + | 67087 | 0.68 | 1 |
Target: 5'- ---aACAACaCCUUAGGA-UUAAAGa- -3' miRNA: 3'- cuuaUGUUG-GGAAUCCUaAAUUUCcu -5' |
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28285 | 5' | -41.3 | NC_005902.1 | + | 35079 | 0.68 | 1 |
Target: 5'- -----aAAgCCUUAGGAaUUAAAGGGu -3' miRNA: 3'- cuuaugUUgGGAAUCCUaAAUUUCCU- -5' |
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28285 | 5' | -41.3 | NC_005902.1 | + | 81307 | 0.68 | 1 |
Target: 5'- -uGUAUAAUCgccAGGGUUUAAAGGAu -3' miRNA: 3'- cuUAUGUUGGgaaUCCUAAAUUUCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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