miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28285 5' -41.3 NC_005902.1 + 81137 1.12 0.07002
Target:  5'- aGAAUACAACCCUUAGGAUUUAAAGGAu -3'
miRNA:   3'- -CUUAUGUUGGGAAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 43830 0.92 0.596494
Target:  5'- -cGUGCAAgCCUUAGGAUUUAAAGGGu -3'
miRNA:   3'- cuUAUGUUgGGAAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 184727 0.91 0.641766
Target:  5'- aAGUAUAAgCCUUAGGAUUUAAAGGAu -3'
miRNA:   3'- cUUAUGUUgGGAAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 100487 0.91 0.641766
Target:  5'- aAGUAUAAgCCUUAGGAUUUAAAGGAu -3'
miRNA:   3'- cUUAUGUUgGGAAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 139954 0.91 0.641766
Target:  5'- aAGUAUAAgCCUUAGGAUUUAAAGGAu -3'
miRNA:   3'- cUUAUGUUgGGAAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 65668 0.89 0.720178
Target:  5'- aAGUAUAAgCCUUAGGAUUUAAAGGGg -3'
miRNA:   3'- cUUAUGUUgGGAAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 34672 0.89 0.720178
Target:  5'- uGAGUAUAAgCUUUAGGAUUUAAAGGAu -3'
miRNA:   3'- -CUUAUGUUgGGAAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 168401 0.87 0.803974
Target:  5'- aAGUAUAAgCCUUAGGGUUUAAAGGGu -3'
miRNA:   3'- cUUAUGUUgGGAAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 90585 0.87 0.813716
Target:  5'- -uGUAUAAgCCUUAGGAUUUAAAGGGu -3'
miRNA:   3'- cuUAUGUUgGGAAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 168569 0.87 0.813716
Target:  5'- -uAUAUAAgCCUUAGGGUUUAAAGGAu -3'
miRNA:   3'- cuUAUGUUgGGAAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 131155 0.87 0.813716
Target:  5'- uGAGUAUAAgCUUUAGGAUUUAAAGGGu -3'
miRNA:   3'- -CUUAUGUUgGGAAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 50392 0.87 0.832583
Target:  5'- -cAUAUAAgCCUUAGGAUUUAAAGGGu -3'
miRNA:   3'- cuUAUGUUgGGAAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 143693 0.87 0.832583
Target:  5'- -cAUAUAAgCCUUAGGAUUUAAAGGGu -3'
miRNA:   3'- cuUAUGUUgGGAAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 184559 0.87 0.832583
Target:  5'- -cAUAUAAgCCUUAGGAUUUAAAGGGu -3'
miRNA:   3'- cuUAUGUUgGGAAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 139785 0.86 0.841687
Target:  5'- -uAUAUAAgCCUUAGGAUUUAAAGGGu -3'
miRNA:   3'- cuUAUGUUgGGAAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 82205 0.86 0.850557
Target:  5'- ---aAUAACaCCUUAGGAUUUAAAGGAu -3'
miRNA:   3'- cuuaUGUUG-GGAAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 163488 0.85 0.898401
Target:  5'- aAGUAUAG-CCUUAGGAUUUAAAGGAu -3'
miRNA:   3'- cUUAUGUUgGGAAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 52478 0.85 0.898401
Target:  5'- cGAAUAUaAGCCC-UAGGAUUUAAAGGGu -3'
miRNA:   3'- -CUUAUG-UUGGGaAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 29139 0.82 0.955473
Target:  5'- aAGUAUAAgCUUUAGGAUUUAAAGGGu -3'
miRNA:   3'- cUUAUGUUgGGAAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 163656 0.8 0.983522
Target:  5'- -uAUAUAG-CCUUAGGAUUUAAAGGGu -3'
miRNA:   3'- cuUAUGUUgGGAAUCCUAAAUUUCCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.