miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28285 5' -41.3 NC_005902.1 + 81137 1.12 0.07002
Target:  5'- aGAAUACAACCCUUAGGAUUUAAAGGAu -3'
miRNA:   3'- -CUUAUGUUGGGAAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 63186 0.76 0.998795
Target:  5'- aAAUAUAAgCCUUAGGAUUUaAAAGGu -3'
miRNA:   3'- cUUAUGUUgGGAAUCCUAAA-UUUCCu -5'
28285 5' -41.3 NC_005902.1 + 10348 0.75 0.999692
Target:  5'- -cGUAUAAgCCUUAGGAUUUaAAAGGu -3'
miRNA:   3'- cuUAUGUUgGGAAUCCUAAA-UUUCCu -5'
28285 5' -41.3 NC_005902.1 + 51401 0.66 1
Target:  5'- ---aACAACacaUUAGGAaUUAAAGGGu -3'
miRNA:   3'- cuuaUGUUGgg-AAUCCUaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 168401 0.87 0.803974
Target:  5'- aAGUAUAAgCCUUAGGGUUUAAAGGGu -3'
miRNA:   3'- cUUAUGUUgGGAAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 90585 0.87 0.813716
Target:  5'- -uGUAUAAgCCUUAGGAUUUAAAGGGu -3'
miRNA:   3'- cuUAUGUUgGGAAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 184559 0.87 0.832583
Target:  5'- -cAUAUAAgCCUUAGGAUUUAAAGGGu -3'
miRNA:   3'- cuUAUGUUgGGAAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 139785 0.86 0.841687
Target:  5'- -uAUAUAAgCCUUAGGAUUUAAAGGGu -3'
miRNA:   3'- cuUAUGUUgGGAAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 78668 0.79 0.990382
Target:  5'- aAGUAUaAGCCC-UAGGAUUUAAAGGGu -3'
miRNA:   3'- cUUAUG-UUGGGaAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 33125 0.76 0.998795
Target:  5'- aAGUAUAAgCCUUAGGAUUUaAAAGGu -3'
miRNA:   3'- cUUAUGUUgGGAAUCCUAAA-UUUCCu -5'
28285 5' -41.3 NC_005902.1 + 149727 0.77 0.996854
Target:  5'- -uGUAUAAgCCUUAGGAUUUAAAGa- -3'
miRNA:   3'- cuUAUGUUgGGAAUCCUAAAUUUCcu -5'
28285 5' -41.3 NC_005902.1 + 163488 0.85 0.898401
Target:  5'- aAGUAUAG-CCUUAGGAUUUAAAGGAu -3'
miRNA:   3'- cUUAUGUUgGGAAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 43830 0.92 0.596494
Target:  5'- -cGUGCAAgCCUUAGGAUUUAAAGGGu -3'
miRNA:   3'- cuUAUGUUgGGAAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 82154 0.77 0.997819
Target:  5'- aGGUAUAAaCUUUAGGAUUUAAAGGGu -3'
miRNA:   3'- cUUAUGUUgGGAAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 34672 0.89 0.720178
Target:  5'- uGAGUAUAAgCUUUAGGAUUUAAAGGAu -3'
miRNA:   3'- -CUUAUGUUgGGAAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 52478 0.85 0.898401
Target:  5'- cGAAUAUaAGCCC-UAGGAUUUAAAGGGu -3'
miRNA:   3'- -CUUAUG-UUGGGaAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 18180 0.76 0.998795
Target:  5'- uAAUGCAugCUgUAGGGUUUAAGGGu -3'
miRNA:   3'- cUUAUGUugGGaAUCCUAAAUUUCCu -5'
28285 5' -41.3 NC_005902.1 + 99702 0.75 0.999501
Target:  5'- ---gAUGACgCCUUAGGAaUUAAAGGAu -3'
miRNA:   3'- cuuaUGUUG-GGAAUCCUaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 65668 0.89 0.720178
Target:  5'- aAGUAUAAgCCUUAGGAUUUAAAGGGg -3'
miRNA:   3'- cUUAUGUUgGGAAUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 50392 0.87 0.832583
Target:  5'- -cAUAUAAgCCUUAGGAUUUAAAGGGu -3'
miRNA:   3'- cuUAUGUUgGGAAUCCUAAAUUUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.