miRNA display CGI


Results 21 - 40 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28286 3' -44.2 NC_005902.1 + 135647 0.67 0.999997
Target:  5'- uAACCCUUUAAauCCUAAgGCUuAUAUGa -3'
miRNA:   3'- -UUGGGAAAUUcuGGAUU-CGA-UAUACg -5'
28286 3' -44.2 NC_005902.1 + 130952 0.67 0.999997
Target:  5'- uAAUCCUUUAAuACUUAAGUUAUAUa- -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAUAUAcg -5'
28286 3' -44.2 NC_005902.1 + 71186 0.67 0.999997
Target:  5'- uAACCCUUUAAccuuuuuaacACUUAAGCUAUAUa- -3'
miRNA:   3'- -UUGGGAAAUUc---------UGGAUUCGAUAUAcg -5'
28286 3' -44.2 NC_005902.1 + 5646 0.67 0.999996
Target:  5'- uAACCCUUUAAcaaUUAAGCUAUAUa- -3'
miRNA:   3'- -UUGGGAAAUUcugGAUUCGAUAUAcg -5'
28286 3' -44.2 NC_005902.1 + 174589 0.67 0.999996
Target:  5'- uGACCgagUUAAcACCUAAGCUAUAUa- -3'
miRNA:   3'- -UUGGga-AAUUcUGGAUUCGAUAUAcg -5'
28286 3' -44.2 NC_005902.1 + 47184 0.67 0.999994
Target:  5'- --aCCUUUAAcACUUAAGCUAUAUa- -3'
miRNA:   3'- uugGGAAAUUcUGGAUUCGAUAUAcg -5'
28286 3' -44.2 NC_005902.1 + 108898 0.67 0.999994
Target:  5'- uAACCUUUUAAcAgCUAGGCUAUAUa- -3'
miRNA:   3'- -UUGGGAAAUUcUgGAUUCGAUAUAcg -5'
28286 3' -44.2 NC_005902.1 + 101126 0.68 0.999991
Target:  5'- uAACCCUUUAAauAUUUAAGCUAUAUa- -3'
miRNA:   3'- -UUGGGAAAUUc-UGGAUUCGAUAUAcg -5'
28286 3' -44.2 NC_005902.1 + 141992 0.68 0.999991
Target:  5'- uAACUCUUUAAcAUUUAAGCUAUAuacaaaUGCg -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAUAU------ACG- -5'
28286 3' -44.2 NC_005902.1 + 81922 0.68 0.999991
Target:  5'- uAACCCUUUAAcAUCUAAGCcAUGaGUa -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGaUAUaCG- -5'
28286 3' -44.2 NC_005902.1 + 88664 0.68 0.999989
Target:  5'- uAACCUUUUAauuauuaaccuacuuAGAUCUAAGauuuuugaaCUGUAUGCa -3'
miRNA:   3'- -UUGGGAAAU---------------UCUGGAUUC---------GAUAUACG- -5'
28286 3' -44.2 NC_005902.1 + 122640 0.68 0.999982
Target:  5'- uACCuCUUUAAcAUCUAAGCUAUAUa- -3'
miRNA:   3'- uUGG-GAAAUUcUGGAUUCGAUAUAcg -5'
28286 3' -44.2 NC_005902.1 + 1259 0.68 0.999982
Target:  5'- uAACUCUUcAAcACCUAGGCUAUAUa- -3'
miRNA:   3'- -UUGGGAAaUUcUGGAUUCGAUAUAcg -5'
28286 3' -44.2 NC_005902.1 + 175936 0.68 0.999975
Target:  5'- uAACCCUUUAAcuCCUAAGgUAUcaucaacaAUGCu -3'
miRNA:   3'- -UUGGGAAAUUcuGGAUUCgAUA--------UACG- -5'
28286 3' -44.2 NC_005902.1 + 31086 0.68 0.999975
Target:  5'- cACCUUUUAAcACCcAAGCUAUgaacaaGUGCa -3'
miRNA:   3'- uUGGGAAAUUcUGGaUUCGAUA------UACG- -5'
28286 3' -44.2 NC_005902.1 + 93713 0.68 0.999975
Target:  5'- uAUCCUUU---ACCUAAGCUAUAUa- -3'
miRNA:   3'- uUGGGAAAuucUGGAUUCGAUAUAcg -5'
28286 3' -44.2 NC_005902.1 + 76021 0.68 0.999975
Target:  5'- uAACCCUUUAAcuCCUAAGgUAUuaucaauaAUGCu -3'
miRNA:   3'- -UUGGGAAAUUcuGGAUUCgAUA--------UACG- -5'
28286 3' -44.2 NC_005902.1 + 90056 0.68 0.999975
Target:  5'- uAACCC-UUAAcACCUAAGUUAUAUa- -3'
miRNA:   3'- -UUGGGaAAUUcUGGAUUCGAUAUAcg -5'
28286 3' -44.2 NC_005902.1 + 55062 0.69 0.999954
Target:  5'- uACCCUUUAAcACCUAAGUUcacuUGUa -3'
miRNA:   3'- uUGGGAAAUUcUGGAUUCGAuau-ACG- -5'
28286 3' -44.2 NC_005902.1 + 124387 0.69 0.999954
Target:  5'- uAACUCUUUAAcAUCUAAGCUAUAc-- -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAUAUacg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.