Results 61 - 80 of 268 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28286 | 5' | -40.1 | NC_005902.1 | + | 85095 | 0.7 | 1 |
Target: 5'- -----aAUAGCUUAGGagUUuAGGGGu -3' miRNA: 3'- cuuauaUAUCGAAUCCagAAuUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 137817 | 0.7 | 1 |
Target: 5'- aAAUAUGUAGCUUAaGagUUAAAGGa -3' miRNA: 3'- cUUAUAUAUCGAAUcCagAAUUUCCc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 173499 | 0.7 | 1 |
Target: 5'- -uGUAUAUAaUUUAGGUaUUAAAGGGu -3' miRNA: 3'- cuUAUAUAUcGAAUCCAgAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 122674 | 0.7 | 1 |
Target: 5'- uGAGUGUAUAGCUUAGaGaUgUUAAAGa- -3' miRNA: 3'- -CUUAUAUAUCGAAUC-C-AgAAUUUCcc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 159782 | 0.7 | 1 |
Target: 5'- aAGUAUAUAGCUaAGua-UUAAAGGGu -3' miRNA: 3'- cUUAUAUAUCGAaUCcagAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 28964 | 0.7 | 1 |
Target: 5'- --cUGUAUAGCUUAGGUgUUAAc--- -3' miRNA: 3'- cuuAUAUAUCGAAUCCAgAAUUuccc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 101227 | 0.7 | 1 |
Target: 5'- ---cAUAUAGCUUAaGagUUAAAGGGu -3' miRNA: 3'- cuuaUAUAUCGAAUcCagAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 5214 | 0.7 | 1 |
Target: 5'- uGAGUAUAUcGCUUAGGUgUU--AGGu -3' miRNA: 3'- -CUUAUAUAuCGAAUCCAgAAuuUCCc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 113211 | 0.7 | 1 |
Target: 5'- aGAAUAUGgAGCUaUAGGUUUaAAAGGu -3' miRNA: 3'- -CUUAUAUaUCGA-AUCCAGAaUUUCCc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 54079 | 0.7 | 1 |
Target: 5'- aGAUAUAUAGUUUAGGUgUUAAc--- -3' miRNA: 3'- cUUAUAUAUCGAAUCCAgAAUUuccc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 26300 | 0.7 | 1 |
Target: 5'- -uAUAUAUAGCUUAGGUaUUAAAa-- -3' miRNA: 3'- cuUAUAUAUCGAAUCCAgAAUUUccc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 65668 | 0.7 | 1 |
Target: 5'- aAGUAUA-AGcCUUAGGaUUUAAAGGGg -3' miRNA: 3'- cUUAUAUaUC-GAAUCCaGAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 22654 | 0.7 | 1 |
Target: 5'- -cAUAUAUAGCUUAGaUgUUaAAAGGGu -3' miRNA: 3'- cuUAUAUAUCGAAUCcAgAA-UUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 118682 | 0.7 | 1 |
Target: 5'- -uAUAUAUAGU-UAGGggUUAAAGGGu -3' miRNA: 3'- cuUAUAUAUCGaAUCCagAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 149878 | 0.7 | 1 |
Target: 5'- -uAUAUAUAGCUUAGaUgUUaAAAGGGu -3' miRNA: 3'- cuUAUAUAUCGAAUCcAgAA-UUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 90094 | 0.71 | 1 |
Target: 5'- uGAGUAUAUAaCUUAaGUgUUAAAGGGu -3' miRNA: 3'- -CUUAUAUAUcGAAUcCAgAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 156949 | 0.71 | 1 |
Target: 5'- uGAGUAUAUAGCUUAaauaUUAAAGGa -3' miRNA: 3'- -CUUAUAUAUCGAAUccagAAUUUCCc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 118112 | 0.71 | 1 |
Target: 5'- -uGUAUAUAGUUagGGGUC--AAAGGGu -3' miRNA: 3'- cuUAUAUAUCGAa-UCCAGaaUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 164729 | 0.71 | 1 |
Target: 5'- aGAGUAUAUAGCUUAGaUgUUAAAaGGu -3' miRNA: 3'- -CUUAUAUAUCGAAUCcAgAAUUUcCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 184779 | 0.71 | 1 |
Target: 5'- -uAUAUAUAGCcUAGGUgUUGAAGa- -3' miRNA: 3'- cuUAUAUAUCGaAUCCAgAAUUUCcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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