miRNA display CGI


Results 101 - 120 of 268 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28286 5' -40.1 NC_005902.1 + 23451 0.73 0.999999
Target:  5'- uGAGUAUAUAGCUUAGGUauuuaUUAAc--- -3'
miRNA:   3'- -CUUAUAUAUCGAAUCCAg----AAUUuccc -5'
28286 5' -40.1 NC_005902.1 + 15192 0.73 0.999999
Target:  5'- -uGUAUAUAGCUUAcaUgUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUccAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 157065 0.73 0.999998
Target:  5'- -uGUGUAUAGCUUAGGUgUUAAc--- -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUuccc -5'
28286 5' -40.1 NC_005902.1 + 55096 0.73 0.999998
Target:  5'- uGAGUAUA-AGCuUUAGGaUUUAAAGGGu -3'
miRNA:   3'- -CUUAUAUaUCG-AAUCCaGAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 88323 0.73 0.999998
Target:  5'- aAAUAUAUAGCUUAGa---UAAAGGGu -3'
miRNA:   3'- cUUAUAUAUCGAAUCcagaAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 113822 0.73 0.999996
Target:  5'- -uAUAUAUAGUUUAGGUgUUAAcGGa -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUuCCc -5'
28286 5' -40.1 NC_005902.1 + 157888 0.73 0.999996
Target:  5'- --uUAUAUAGCUUAGGUgUUAAAa-- -3'
miRNA:   3'- cuuAUAUAUCGAAUCCAgAAUUUccc -5'
28286 5' -40.1 NC_005902.1 + 73970 0.73 0.999996
Target:  5'- -uAUAUAUGaUUUAGGUgUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUcGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 92331 0.73 0.999996
Target:  5'- --cUAUAUAGCUUAGGU---AAAGGa -3'
miRNA:   3'- cuuAUAUAUCGAAUCCAgaaUUUCCc -5'
28286 5' -40.1 NC_005902.1 + 137787 0.73 0.999996
Target:  5'- -uAUAUAUAGCUUAaGUgUUAAAGGa -3'
miRNA:   3'- cuUAUAUAUCGAAUcCAgAAUUUCCc -5'
28286 5' -40.1 NC_005902.1 + 156591 0.73 0.999996
Target:  5'- -uAUAUAUAaUUUGGGUgUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUcGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 107181 0.73 0.999999
Target:  5'- uGAGUAUAUAGCUUaaGGGUUa-AAAGGu -3'
miRNA:   3'- -CUUAUAUAUCGAA--UCCAGaaUUUCCc -5'
28286 5' -40.1 NC_005902.1 + 144191 0.74 0.999988
Target:  5'- -uGUAUAUAGUUUAGaUgUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCcAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 134439 0.74 0.999983
Target:  5'- -------cAGCUUAGGUaUUAAAGGGu -3'
miRNA:   3'- cuuauauaUCGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 11449 0.74 0.999983
Target:  5'- -cGUAUAUAGCUUAGGUgUUAAcucGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUu--CCc -5'
28286 5' -40.1 NC_005902.1 + 77183 0.74 0.999983
Target:  5'- -uAUAUAUAaUUUAGGUgUUGAAGGGu -3'
miRNA:   3'- cuUAUAUAUcGAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 182966 0.74 0.999983
Target:  5'- -uAUAUAUAGCUUAGGUgUUAAAu-- -3'
miRNA:   3'- cuUAUAUAUCGAAUCCAgAAUUUccc -5'
28286 5' -40.1 NC_005902.1 + 120289 0.74 0.999988
Target:  5'- -cAUAUAUAGUUcAGGUgUUAAAGGa -3'
miRNA:   3'- cuUAUAUAUCGAaUCCAgAAUUUCCc -5'
28286 5' -40.1 NC_005902.1 + 55158 0.74 0.999992
Target:  5'- -uGUAUAUAGCUUGaGagUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUcCagAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 12863 0.74 0.999994
Target:  5'- -uGUAUAUAaCUUAGGagUUAAGGGGu -3'
miRNA:   3'- cuUAUAUAUcGAAUCCagAAUUUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.