Results 121 - 140 of 268 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28286 | 5' | -40.1 | NC_005902.1 | + | 144191 | 0.74 | 0.999988 |
Target: 5'- -uGUAUAUAGUUUAGaUgUUAAAGGGu -3' miRNA: 3'- cuUAUAUAUCGAAUCcAgAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 15509 | 0.74 | 0.999994 |
Target: 5'- -uAUAUAUAGUUUAGGUgUUAAAaGGu -3' miRNA: 3'- cuUAUAUAUCGAAUCCAgAAUUUcCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 77183 | 0.74 | 0.999983 |
Target: 5'- -uAUAUAUAaUUUAGGUgUUGAAGGGu -3' miRNA: 3'- cuUAUAUAUcGAAUCCAgAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 25159 | 0.74 | 0.999994 |
Target: 5'- uGAGUAUAUAGCUUAGGggUUAAAu-- -3' miRNA: 3'- -CUUAUAUAUCGAAUCCagAAUUUccc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 153064 | 0.74 | 0.999994 |
Target: 5'- uGAGUAUAUAGUUUAGGUgUUAAc--- -3' miRNA: 3'- -CUUAUAUAUCGAAUCCAgAAUUuccc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 12863 | 0.74 | 0.999994 |
Target: 5'- -uGUAUAUAaCUUAGGagUUAAGGGGu -3' miRNA: 3'- cuUAUAUAUcGAAUCCagAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 163426 | 0.75 | 0.999964 |
Target: 5'- aAAUAUAUAGCUUAGGUgUUAacccuuuaaauccuAAGGc -3' miRNA: 3'- cUUAUAUAUCGAAUCCAgAAU--------------UUCCc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 116860 | 0.75 | 0.999955 |
Target: 5'- ---cAUAUAGCUUAGaUgUUAAAGGGu -3' miRNA: 3'- cuuaUAUAUCGAAUCcAgAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 131103 | 0.75 | 0.999976 |
Target: 5'- -cAUAUAUAGCUUAaGUaUUAAAGGGu -3' miRNA: 3'- cuUAUAUAUCGAAUcCAgAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 124518 | 0.75 | 0.999976 |
Target: 5'- -cAUAUAUAGCUUAaGUaUUAAAGGGu -3' miRNA: 3'- cuUAUAUAUCGAAUcCAgAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 92202 | 0.75 | 0.999955 |
Target: 5'- -uGUAUAUAGCUUAGGUaUUAAAuGGu -3' miRNA: 3'- cuUAUAUAUCGAAUCCAgAAUUUcCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 48267 | 0.75 | 0.999967 |
Target: 5'- -uAUAUAUAGCUUAGGUgUUAAAa-- -3' miRNA: 3'- cuUAUAUAUCGAAUCCAgAAUUUccc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 68314 | 0.75 | 0.999955 |
Target: 5'- ---cAUAUAGCUUAGaUgUUAAAGGGu -3' miRNA: 3'- cuuaUAUAUCGAAUCcAgAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 182605 | 0.75 | 0.999939 |
Target: 5'- aAAUAUAaGGCUUAGuUUUUAAAGGGu -3' miRNA: 3'- cUUAUAUaUCGAAUCcAGAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 16529 | 0.75 | 0.999955 |
Target: 5'- aGAUAUAUAGCUcAGGUgUUAAAGa- -3' miRNA: 3'- cUUAUAUAUCGAaUCCAgAAUUUCcc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 19914 | 0.75 | 0.999955 |
Target: 5'- -uGUAUAUAGCUUAaGUaUUAAAGGGu -3' miRNA: 3'- cuUAUAUAUCGAAUcCAgAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 84909 | 0.75 | 0.999955 |
Target: 5'- uGAGUAUAUAGCUUAaauaUUUAAAGGGu -3' miRNA: 3'- -CUUAUAUAUCGAAUcca-GAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 3108 | 0.75 | 0.999955 |
Target: 5'- -cAUAUAUAGCUUAGGUgUUAAAa-- -3' miRNA: 3'- cuUAUAUAUCGAAUCCAgAAUUUccc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 71688 | 0.76 | 0.999891 |
Target: 5'- -uGUAUAUAGCUUAGGUgUUAGAa-- -3' miRNA: 3'- cuUAUAUAUCGAAUCCAgAAUUUccc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 3478 | 0.76 | 0.999891 |
Target: 5'- -uGUAUAUAGCUUAGGUgUUAaaaucGAGuGGu -3' miRNA: 3'- cuUAUAUAUCGAAUCCAgAAU-----UUC-CC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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